Gene detail

Detail information of GWHGAAZE005546

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010907077.1	1.42553E-82	PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Elaeis guineensis]
Swissprot	tr\|Q42540\|UBC7_ARATH	8E-73	Ubiquitin-conjugating enzyme E2 7
trEMBL	tr\|C5XPM8\|C5XPM8_SORBI	1E-81	Putative uncharacterized protein Sb03g039320 {ECO:0000313\|EMBL:EES03856.1}
TAIR10	AT5G59300.1	4E-51	ubiquitin carrier protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9761652	9771249	+
GWHAAZE00000002	mRNA	9761652	9771249	+
GWHAAZE00000002	exon	9761652	9761751	+
GWHAAZE00000002	exon	9761885	9761987	+
GWHAAZE00000002	exon	9769719	9769816	+
GWHAAZE00000002	exon	9769899	9770002	+
GWHAAZE00000002	exon	9770163	9770240	+
GWHAAZE00000002	exon	9770492	9770642	+
GWHAAZE00000002	exon	9771192	9771249	+
GWHAAZE00000002	CDS	9761652	9761751	+
GWHAAZE00000002	CDS	9761885	9761987	+
GWHAAZE00000002	CDS	9769719	9769816	+
GWHAAZE00000002	CDS	9769899	9770002	+
GWHAAZE00000002	CDS	9770163	9770240	+
GWHAAZE00000002	CDS	9770492	9770584	+
GWHAAZE00000002	three_prime_UTR	9770585	9770642	+
GWHAAZE00000002	three_prime_UTR	9771192	9771249	+

Transcript Sequence
>GWHTAAZE005554 CACAACGCACTCTCCCTTTCTCTTTCTTCCTCTGGGGTGTGTGTGGGGGATATGGCTTCAGCCTCTCAAGCAAGTCTTCTTCTTGTTAAGCAGCTCAAAGATCTCTATAAAAAACCAGTTGATGGCTTCTCTGCTGGTTTGGTTGATGAGAGCAATGTTTTTGAATGGAGTGTTACCATTATTGGACCTCCCGATACTCTCTATGATGGGGGCTATTTTAATGCAATCATGAGCTTTCCGTTGAACTACCCAAACAGTCCTCCATCAGTTAAATTTACCTCAGAGATGTGGCACCCCAATGTTTATCCTGATGGTGAGTTTGTATTTCGATTTTACATCCTCCTGGTGATGACCCAAATGGTTATGAGCTTGCAGTTAAGCTGCGCTTGGACACCGGTCCATACTGTTGAGAGCATACTTTTGAGTATTATTTCAATGCTTTCAAGCCCTAACGATGAATCTCCTGCAAATATTGATGCTGCGAAAGAATGGAGAGATAAGAGAGAAGAGTTTAGGAAGAAAGTCAGCCGTAGTGTGAAAGATCTCAAGAGATGTTTTGATCTGCCACTGCGTTAGATATTATCTTATTACTGAGTAAGAACTACTCAGCCCTCGGATGATGCCTCGTCAATATGTCTGATTTAAGATTTGGACAGCTGATTAACTTCCTGGGGTTCTCAAAATCTGGTGTC

Network for GWHGAAZE005546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	28	177	2.50E-44

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10575	UBE2G1, UBC7	Protein processing in endoplasmic reticulum	map04141
K10575	UBE2G1, UBC7	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.425
	SRR3591706	second leaf	20.408
	SRR3591707	mature leaf	78.197
	SRR3591708	Shoot apex	27.065
	SRR3591709	Stem	37.906
	SRR3591710	White floral bud	30.960
	SRR3591711	White flower	18.038
	SRR3591712	Green floral bud	48.218
	SRR3591713	Yellow flower	12.811
SRP173429	SRR8316895	Juvenile bud stage	10.976
	SRR8316896	Juvenile bud stage	15.743
	SRR8316897	Juvenile bud stage	6.206
	SRR8316894	Third green stage	6.536
	SRR8316900	Third green stage	21.555
	SRR8316901	Third green stage	24.525
	SRR8316898	Complete white stage	11.238
	SRR8316899	Complete white stage	46.580
	SRR8316903	Complete white stage	15.268
	SRR8316902	Silver flowering stage	2.329
	SRR8316904	Silver flowering stage	3.943
	SRR8316905	Silver flowering stage	2.822
	SRR8316906	Gold flowering stage	3.505
	SRR8316907	Gold flowering stage	5.366
	SRR8316908	Gold flowering stage	4.170
SRP132670	SRR6706286	Control	97.787
	SRR6706287	Light intensity 50%	100.946
	SRR6706288	Light intensity 20%	101.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.159
	CNS0095593	Slightly white alabastrum(diploid) 2	12.299
	CNS0095594	Slightly white alabastrum(diploid) 3	12.847
	CNS0095595	Whole white alabastrum(diploid) 2	14.591
	CNS0095596	Whole white alabastrum(diploid) 3	12.841
	CNS0095597	Whole white alabastrum(diploid) 4	18.185
	CNS0095598	Silvery flower (diploied) 1	16.414
	CNS0095599	Silvery flower (diploied) 2	11.655
	CNS0095600	Silvery flower (diploied) 3	17.026
	CNS0095601	Golden flower (diploid) 1	18.718
	CNS0095602	Golden flower (diploid) 2	23.257
	CNS0095603	Golden flower (diploid) 3	22.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.515
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.999
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.566
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.655
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.825
	CNS0095610	Silvery flower (tetraploid) 1	12.963
	CNS0095611	Silvery flower (tetraploid) 2	20.633
	CNS0095612	Silvery flower (tetraploid) 3	14.301
	CNS0095613	Golden flower (tetraploid) 1	5.164
	CNS0095614	Golden flower (tetraploid) 2	10.672
	CNS0095615	Golden flower (tetraploid) 3	10.820
CRA001975	CRR073297	Stem 1	16.280
	CRR073298	Stem 2	18.917
	CRR073299	Stem 3	21.731
	CRR073300	Leaf 1	22.483
	CRR073301	Leaf 2	22.896
	CRR073302	Leaf 3	20.840
	CRR073303	Juvenile bud 1	38.720
	CRR073304	Juvenile bud 2	36.597
	CRR073305	Juvenile bud 3	35.362
	CRR073306	Third green 1	7.490
	CRR073307	Third green 2	11.786
	CRR073308	Third green 3	8.771
	CRR073309	Second white 1	5.502
	CRR073310	Second white 2	3.382
	CRR073311	Second white 3	0.819
	CRR073312	Silver flowering 1	0.437
	CRR073313	Silver flowering 2	1.841
	CRR073314	Silver flowering 3	1.273
	CRR073315	Gold flowering 1	23.363
	CRR073316	Gold flowering 2	18.625
	CRR073317	Gold flowering 3	45.179
	CRR073318	Tawny withering 1	15.128
	CRR073319	Tawny withering 2	21.357
	CRR073320	Tawny withering 3	23.197