Gene detail

Detail information of GWHGAAZE005528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06608.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|A0A068UG52\|A0A068UG52_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06608.1}
TAIR10	AT2G28930.1	2E-160	protein kinase 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9427810	9430329	-
GWHAAZE00000002	mRNA	9427810	9430329	-
GWHAAZE00000002	exon	9427810	9428264	-
GWHAAZE00000002	exon	9428946	9429069	-
GWHAAZE00000002	exon	9429179	9429321	-
GWHAAZE00000002	exon	9429557	9429692	-
GWHAAZE00000002	exon	9429988	9430329	-
GWHAAZE00000002	CDS	9429988	9430329	-
GWHAAZE00000002	CDS	9429557	9429692	-
GWHAAZE00000002	CDS	9429179	9429321	-
GWHAAZE00000002	CDS	9428946	9429069	-
GWHAAZE00000002	CDS	9427810	9428264	-

Transcript Sequence
>GWHTAAZE005536 ATGTATCAAATTGGATTTTGTGTAGGCGAGGATTCTAAAAACGTAAGCAGAGATGGGAGTAATTCAAATAGCAGAGCTTCTTCAACTTCAGTACCCCCAACTCCTAGGAGTGAGGGTGAGATTTTACAGTCCTCTAATATAAAGAGCTTCACCTTCAATGAACTTAAAGCCGCTACCAGAAACTTCCGGCCTGATAGCGTATTAGGAGAAGGTGGTTTCGGTTCTGTTTTCAAAGGTTGGGTTGACGAGCAATCACTTGTTGCTTCAAAACCCGGAACTGGGATGGTGATTGCTGTGAAGAGGCTTAACCAAGAAGGGTTCCAAGGGCACAAAGAATGGCTGGCAGAAATTAATTATCTTGGTCAGCTCCGCCATCCTAATCTTGTGAAACTGGTCGGATACTGCTTAGAGGATGACCACAGGCTTTTGGTGTACGAGTTCATGCCTAAGGGAAGCATGGAGAATCATTTATTCAGAAGAGGATCTTATTTTCAGCCGCTTTCCTGGAGTCTTCGTATGAAAGTTGCTCTTGGTGCCGCGAGGGGACTTGCTTTTCTTCATGGTGCTGAAACGCAGGTCATATATAGGGACTTCAAGACTTCAAATATCCTCCTTGACTCGAACTTCAATGCAAAACTTTCTGATTTTGGGTTGGCAAGGGATGGACCAACTGGTGATAAAAGCCATGTCTCCACAAGGGTTATGGGAACCTACGGATATGCTGCCCCAGAGTATCTATCCACAGGTCATCTAACGGCCAAGAGCGACGTATACAGCTTCGGAGTCGTTCTTCTAGAAATATTATCGGGTAAGAAGGCAATAGACAAGAATCAGCCAGCGGGTCAACACAGCTTAGTGGAGTGGGCTAAACCTTGCCTTAGCAACAAGCGTAGGATTTTCCGTGTGTTGGATGCTCGTCTCGAAGGTCAGTATTCACTGGGACGGGCACTAAAGGTTGCAAATCTCGCGCTTCAATGCTTAGGCACAGAACCCAAGTTGAGGCCGAGCATGGACGAAGTTGTGAAGGCCTTGGAAGAACTTCAAGGCTCAAAGGAGATGAGATCCAAAAATGATCAAAAAGAGCAGCATTTGAATTATAATGCCACTGCTAAAACTAGGCCTTGCAGAAGCACTGCAGCAGGGGATGCTCCTGTTATTGCTGCTTATCCTAGACCATCTGCTTCCCCTCTTTATGCGTAG

Network for GWHGAAZE005528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	66	344	2.00E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.112
	SRR3591706	second leaf	19.187
	SRR3591707	mature leaf	31.689
	SRR3591708	Shoot apex	16.901
	SRR3591709	Stem	13.595
	SRR3591710	White floral bud	42.604
	SRR3591711	White flower	67.932
	SRR3591712	Green floral bud	18.933
	SRR3591713	Yellow flower	81.762
SRP173429	SRR8316895	Juvenile bud stage	10.482
	SRR8316896	Juvenile bud stage	15.901
	SRR8316897	Juvenile bud stage	6.603
	SRR8316894	Third green stage	6.805
	SRR8316900	Third green stage	13.232
	SRR8316901	Third green stage	17.398
	SRR8316898	Complete white stage	13.639
	SRR8316899	Complete white stage	25.141
	SRR8316903	Complete white stage	17.536
	SRR8316902	Silver flowering stage	21.919
	SRR8316904	Silver flowering stage	25.384
	SRR8316905	Silver flowering stage	13.611
	SRR8316906	Gold flowering stage	80.273
	SRR8316907	Gold flowering stage	64.322
	SRR8316908	Gold flowering stage	86.298
SRP132670	SRR6706286	Control	18.825
	SRR6706287	Light intensity 50%	19.297
	SRR6706288	Light intensity 20%	18.793
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.160
	CNS0095593	Slightly white alabastrum(diploid) 2	7.139
	CNS0095594	Slightly white alabastrum(diploid) 3	11.750
	CNS0095595	Whole white alabastrum(diploid) 2	8.718
	CNS0095596	Whole white alabastrum(diploid) 3	5.683
	CNS0095597	Whole white alabastrum(diploid) 4	7.750
	CNS0095598	Silvery flower (diploied) 1	29.199
	CNS0095599	Silvery flower (diploied) 2	26.908
	CNS0095600	Silvery flower (diploied) 3	43.185
	CNS0095601	Golden flower (diploid) 1	32.572
	CNS0095602	Golden flower (diploid) 2	58.671
	CNS0095603	Golden flower (diploid) 3	59.291
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.563
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.464
	CNS0095610	Silvery flower (tetraploid) 1	47.436
	CNS0095611	Silvery flower (tetraploid) 2	46.589
	CNS0095612	Silvery flower (tetraploid) 3	98.444
	CNS0095613	Golden flower (tetraploid) 1	62.381
	CNS0095614	Golden flower (tetraploid) 2	64.812
	CNS0095615	Golden flower (tetraploid) 3	97.725
CRA001975	CRR073297	Stem 1	25.171
	CRR073298	Stem 2	21.966
	CRR073299	Stem 3	27.775
	CRR073300	Leaf 1	18.475
	CRR073301	Leaf 2	18.665
	CRR073302	Leaf 3	17.726
	CRR073303	Juvenile bud 1	17.617
	CRR073304	Juvenile bud 2	20.683
	CRR073305	Juvenile bud 3	15.555
	CRR073306	Third green 1	63.403
	CRR073307	Third green 2	36.803
	CRR073308	Third green 3	47.857
	CRR073309	Second white 1	96.430
	CRR073310	Second white 2	74.510
	CRR073311	Second white 3	87.708
	CRR073312	Silver flowering 1	129.810
	CRR073313	Silver flowering 2	136.293
	CRR073314	Silver flowering 3	95.244
	CRR073315	Gold flowering 1	37.209
	CRR073316	Gold flowering 2	40.423
	CRR073317	Gold flowering 3	40.409
	CRR073318	Tawny withering 1	26.620
	CRR073319	Tawny withering 2	22.978
	CRR073320	Tawny withering 3	17.854