Gene detail

Detail information of GWHGAAZE005504

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011094896.1	PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Sesamum indicum]
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|F6HL80\|F6HL80_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55567.1}
TAIR10	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9062821	9064880	+
GWHAAZE00000002	mRNA	9062821	9064880	+
GWHAAZE00000002	exon	9062821	9064340	+
GWHAAZE00000002	exon	9064439	9064880	+
GWHAAZE00000002	CDS	9062821	9064340	+
GWHAAZE00000002	CDS	9064439	9064880	+

Transcript Sequence
>GWHTAAZE005512 ATGCCCAATTCCCTCCTCCTTTTTTCCCTCATCCCCCTCCTCCTCTCAATCCCACCACCTTCATTTCAGCTAGATGAGTTCACTTACACTGGATTTTCCAATTCCAACATAACCTTAAGTGGAGTTGCCAACATCAACAAAAATGGCATCCTTCAATTAACAAACATAACCAGTAGACTAATGGGTCACTCTTTTTACCCATCCCCACTTCACTTCAAGAACCCTAATTCCTCTGTTTTCTCTTTCTCCACTTGTTTTGCTTTTGTAATAGTTCCCGAATACCCCAAACTCGGTGGCCATGGCCTTGCTTTCACAATCTCCCCATCTTTGGATTTTGTCAAATCGGCTCTTCCTAGCCAGTACCTCGGACTCCTCAACGCCACCGACCTCGGAAACTTCACCAACCACCTCTTCGCCGTCGAATTTGACACCGTACAAGATTTCGAGTTCGGGGACATTAATGATAATCACGTCGGCATCGATATTAACAGTTTACACTCCAGCAAATCCTCAAAGGCGGCATATTATTCAGATGATTTGATAGAACAAGATATGAATCTCAGGGGTGGCAAGATGATAATGGCTTGGATCGAATACGATTCGATTACTAACTTAATTAATGTTACGATTTCGCCTTCTTCTTCAAAACCCAAATTGCCTCTTTTGTCTTTTCACTTGGATCTGTCGAATATTCTTCGAGAGGATATGTATGTTGGGTTTTCTTCTTCAACGGGTTTGCTTGCGAGTTCGCATTATATATTGGGTTGGAGCTTTAAAATGAATGGTGATGCCAAATTTTTGGATACAGCTTCTTTACCACCACTTCCAGGAATAAAGAAGAAACATACAGGTGCCATTATTTGGGTTTCCGTTTTGGCAATTGTTATTGCAATTTGTTCAATTTTTGTTGTGATTTATGTGGTGAGGAAAATCAAGAACGCTGAGGTAATTGAAGCTTGGGAGGTAGAAATTGGTCCACATAGATATTCATATAAAGAACTCAAGCAAGCGACTAAAGGTTTCAAGCAGAGTGAGCTACTTGGGTTTGGAGGATTTGGTCAAGTTTACAAAGGGACTTTACCGAATTCGAATACCCAAGTTGCTGTTAAGAGAATTTCACAAGAATCTAAACAGGGTTTGCGCGAATTTGTATCTGAAATCGCCACAATAGGCCGGCTTCGCCATAGGAATCTGGTTCAGTTATTGGGCTGGTGTCGTAAGCTTGGTGATTTGCTACTTGTATATGATTTTATGTCTAATGGAAGCTTAGACAACTTCTTGTTCGATGAGCCCAAATCGATATTGAATTGGGAACAAAGATTCAACATCATTAAAGGGGTTGCTTCCGGGCTATTGTACTTGCACGAAGGATACGAGCAAATTGTTATACATAGAGACATTAAGGCTAGTAATGTTTTACTTGATGGGGAGCTAAATGGCCGACTGGGGGACTTTGGGTTAGCAAGATTGTATGATCATGGAGAGAATCCAAGCACGACGAGAGTGGTGGGCACTTTGGGACCGATTGAGCCTAAAGCATTGCCTGAAGAATTGGTTTTGGTGGATTGGGTGTGGGATAAATGGACAGAAGGGCGGTTTCTTGATGTGGTGGACCCTAAACTGAAGGGCAAGTTTGTTGAGAAGGAGGTAGCGATGGTGTTGAAGTTGGGACTTATGTGTTCAAATAATGCGCAATTGGCAAGGCCTACTATGAGGCAAGTGGTGCGGTATTTGGAGGGGGAGGTTGAGGCGCCAGAGGTTATAAGGCCGCCTTGTGGGTATGATGGAGCCAGGAAGAGTGGGGAAGACGGGTTTGATGATTATATACATTCGTATGCATCTTCTTCATTTGAGAAAACGAGTTCGTATTTGATTACTGCAACTGGGGACGTTGATGTTAGTTTTGCTTCTATATCTACCTTGCCGTTATCCCTTGTGTGTGACAAAGAGGGAGCTAGATAG

Network for GWHGAAZE005504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	26	271	9.40E-76
PF00069.26	Pkinase	341	514	1.20E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.815
	SRR3591706	second leaf	3.849
	SRR3591707	mature leaf	2.969
	SRR3591708	Shoot apex	4.549
	SRR3591709	Stem	7.671
	SRR3591710	White floral bud	8.108
	SRR3591711	White flower	4.448
	SRR3591712	Green floral bud	3.371
	SRR3591713	Yellow flower	0.896
SRP173429	SRR8316895	Juvenile bud stage	4.434
	SRR8316896	Juvenile bud stage	2.876
	SRR8316897	Juvenile bud stage	2.348
	SRR8316894	Third green stage	2.291
	SRR8316900	Third green stage	5.422
	SRR8316901	Third green stage	4.955
	SRR8316898	Complete white stage	1.775
	SRR8316899	Complete white stage	9.767
	SRR8316903	Complete white stage	3.479
	SRR8316902	Silver flowering stage	1.215
	SRR8316904	Silver flowering stage	1.481
	SRR8316905	Silver flowering stage	0.852
	SRR8316906	Gold flowering stage	1.345
	SRR8316907	Gold flowering stage	1.477
	SRR8316908	Gold flowering stage	1.507
SRP132670	SRR6706286	Control	5.511
	SRR6706287	Light intensity 50%	5.283
	SRR6706288	Light intensity 20%	5.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.512
	CNS0095593	Slightly white alabastrum(diploid) 2	3.690
	CNS0095594	Slightly white alabastrum(diploid) 3	2.673
	CNS0095595	Whole white alabastrum(diploid) 2	3.464
	CNS0095596	Whole white alabastrum(diploid) 3	2.114
	CNS0095597	Whole white alabastrum(diploid) 4	2.600
	CNS0095598	Silvery flower (diploied) 1	4.502
	CNS0095599	Silvery flower (diploied) 2	5.316
	CNS0095600	Silvery flower (diploied) 3	4.935
	CNS0095601	Golden flower (diploid) 1	4.599
	CNS0095602	Golden flower (diploid) 2	5.463
	CNS0095603	Golden flower (diploid) 3	5.932
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.280
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.715
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.804
	CNS0095610	Silvery flower (tetraploid) 1	2.449
	CNS0095611	Silvery flower (tetraploid) 2	2.220
	CNS0095612	Silvery flower (tetraploid) 3	1.453
	CNS0095613	Golden flower (tetraploid) 1	1.034
	CNS0095614	Golden flower (tetraploid) 2	1.607
	CNS0095615	Golden flower (tetraploid) 3	0.534
CRA001975	CRR073297	Stem 1	2.438
	CRR073298	Stem 2	3.871
	CRR073299	Stem 3	2.804
	CRR073300	Leaf 1	5.579
	CRR073301	Leaf 2	4.764
	CRR073302	Leaf 3	3.671
	CRR073303	Juvenile bud 1	3.907
	CRR073304	Juvenile bud 2	2.625
	CRR073305	Juvenile bud 3	9.454
	CRR073306	Third green 1	0.710
	CRR073307	Third green 2	0.354
	CRR073308	Third green 3	0.627
	CRR073309	Second white 1	0.164
	CRR073310	Second white 2	0.290
	CRR073311	Second white 3	0.364
	CRR073312	Silver flowering 1	0.214
	CRR073313	Silver flowering 2	0.226
	CRR073314	Silver flowering 3	0.146
	CRR073315	Gold flowering 1	0.400
	CRR073316	Gold flowering 2	2.368
	CRR073317	Gold flowering 3	2.856
	CRR073318	Tawny withering 1	3.695
	CRR073319	Tawny withering 2	8.424
	CRR073320	Tawny withering 3	6.554