Gene detail

Detail information of GWHGAAZE005500

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P50165.1TRNH_DATST	1.7432E-136	RecName: Full=Tropinone reductase homolog; AltName: Full=P29X [Datura stramonium]
Swissprot	tr\|P50165\|TRNH_DATST	8E-139	Tropinone reductase homolog
trEMBL	tr\|F6HL77\|F6HL77_VITVI	2E-134	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55564.1}
TAIR10	AT5G06060.1	9E-92	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8945245	8946871	-
GWHAAZE00000002	mRNA	8945245	8946871	-
GWHAAZE00000002	exon	8946536	8946871	-
GWHAAZE00000002	exon	8946141	8946348	-
GWHAAZE00000002	exon	8945840	8946056	-
GWHAAZE00000002	exon	8945615	8945727	-
GWHAAZE00000002	exon	8945245	8945421	-
GWHAAZE00000002	five_prime_UTR	8946625	8946871	-
GWHAAZE00000002	CDS	8946536	8946624	-
GWHAAZE00000002	CDS	8946141	8946348	-
GWHAAZE00000002	CDS	8945840	8946056	-
GWHAAZE00000002	CDS	8945615	8945727	-
GWHAAZE00000002	CDS	8945245	8945421	-

Transcript Sequence
>GWHTAAZE005508 GTCCTTAATTTTGGAGAAGACCTTTGGTGAAGATGTAGCTTTTGTTTTATTGAGTCAGAGTCACTAAATTAGAAAACTACTCGCACTCACTAATTATTGGATAACGGTCTTGTAACACTTCTTCTCTAGGTCTATATAAGCCATTCTTCACACCCACTGATTGGATAAGGGTATAACACCTCTCTTGATCCGAAGCCATTTTGGCCCCTGATCGAATTTAGATAAGATTGCTGCAGATCAGAGAAACATGGCACAAGTTGAGGTGGGCGGGAATGACAAAAGGTGGTCTCTCAAGGGAACTACCGCCCTTGTGACGGGTGGAACTCGGGGAATTGGGTACGCAATTGTTGAAGAGCTAGCAAGTTTTGGGGCAGAGGTCCACACTTGTTCTCGAAACCAAAAAGAACTCGACGAATGCATAGAACAATGGAAAAATAAAGGCTTCACAGTGACAGGATCCGTGTGTGACCTTTTATTGCCAGCCCAACGCCAGAAGCTTATGGAAACTATAGCCAGTGTCTTCAATGGAAAACTCAACATCCTTGTAAACAATGCTGGAATATGTACACCGAAAGAAACAACAGAATTCAGTGAAGCGGATTGCTCAGCTGTAATGGGTACCAATTTTGGGGCATCATACCATTTATGTCAACTAGCCCACCCACTGTTGAAGGCATCAAAAAGGGGAAGCATTGTATTTAACTCTTCCGTTGCTGGTGTCATTGCTCTGCCCTACGTTTCTATTTATGCAGCATCTAAAGGAGCAATAAATCAAGTCACGAAGAACTTGGCATGCGAATGGGCCAAGGATGATATTCGTGTCAACTCAGTAGCACCATGGGTTATCAGAACTTCACTCATTGAAGCATTGGAAAAAGATCCTGTTGAGAAGGGTAAAATAGCACAGATGGTATCTCGGACACCTATCCGTCGACCCGGAGAGCCTAAGGAGGTTTCGTCACTGGTGGCGTTCCTTTGTTTTCCGGCTGCTTCGTATATCACTGGGCAGGTCATTTGTGTCGATGGGGGATATGCTGTTAATGGCTTCTAA

Network for GWHGAAZE005500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	26	262	2.50E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08081	TR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.656
	SRR8316896	Juvenile bud stage	5.940
	SRR8316897	Juvenile bud stage	1.936
	SRR8316894	Third green stage	0.580
	SRR8316900	Third green stage	1.199
	SRR8316901	Third green stage	0.852
	SRR8316898	Complete white stage	1.385
	SRR8316899	Complete white stage	3.791
	SRR8316903	Complete white stage	2.142
	SRR8316902	Silver flowering stage	2.082
	SRR8316904	Silver flowering stage	1.297
	SRR8316905	Silver flowering stage	0.562
	SRR8316906	Gold flowering stage	3.588
	SRR8316907	Gold flowering stage	2.317
	SRR8316908	Gold flowering stage	1.960
SRP132670	SRR6706286	Control	5.013
	SRR6706287	Light intensity 50%	3.400
	SRR6706288	Light intensity 20%	2.006
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.902
	CNS0095593	Slightly white alabastrum(diploid) 2	2.913
	CNS0095594	Slightly white alabastrum(diploid) 3	2.163
	CNS0095595	Whole white alabastrum(diploid) 2	1.262
	CNS0095596	Whole white alabastrum(diploid) 3	0.732
	CNS0095597	Whole white alabastrum(diploid) 4	1.787
	CNS0095598	Silvery flower (diploied) 1	18.373
	CNS0095599	Silvery flower (diploied) 2	7.977
	CNS0095600	Silvery flower (diploied) 3	2.112
	CNS0095601	Golden flower (diploid) 1	9.689
	CNS0095602	Golden flower (diploid) 2	8.553
	CNS0095603	Golden flower (diploid) 3	8.479
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.112
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.883
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.314
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.104
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.700
	CNS0095610	Silvery flower (tetraploid) 1	5.777
	CNS0095611	Silvery flower (tetraploid) 2	4.364
	CNS0095612	Silvery flower (tetraploid) 3	1.863
	CNS0095613	Golden flower (tetraploid) 1	4.634
	CNS0095614	Golden flower (tetraploid) 2	7.280
	CNS0095615	Golden flower (tetraploid) 3	3.914
CRA001975	CRR073297	Stem 1	3.479
	CRR073298	Stem 2	3.198
	CRR073299	Stem 3	1.920
	CRR073300	Leaf 1	0.770
	CRR073301	Leaf 2	1.516
	CRR073302	Leaf 3	1.257
	CRR073303	Juvenile bud 1	0.049
	CRR073304	Juvenile bud 2	0.058
	CRR073305	Juvenile bud 3	1.017
	CRR073306	Third green 1	0.209
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.500
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.040
	CRR073315	Gold flowering 1	48.589
	CRR073316	Gold flowering 2	68.488
	CRR073317	Gold flowering 3	37.582
	CRR073318	Tawny withering 1	53.843
	CRR073319	Tawny withering 2	59.447
	CRR073320	Tawny withering 3	30.459