Detail information of GWHGAAZE005488


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273930.10PREDICTED: serine/threonine-protein kinase ATG1 [Vitis vinifera]
Swissprottr|Q6ERS4|CIPKG_ORYSJ1E-49CBL-interacting protein kinase 16
trEMBLtr|F6HL35|F6HL35_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55552.1}
TAIR10AT2G37840.10Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene87653228771627-
GWHAAZE00000002mRNA87653228771627-
GWHAAZE00000002exon87713828771627-
GWHAAZE00000002exon87705468770666-
GWHAAZE00000002exon87704128770470-
GWHAAZE00000002exon87695338769597-
GWHAAZE00000002exon87693268769419-
GWHAAZE00000002exon87691638769243-
GWHAAZE00000002exon87686948768802-
GWHAAZE00000002exon87675778767649-
GWHAAZE00000002exon87666548767497-
GWHAAZE00000002exon87662918766573-
GWHAAZE00000002exon87660318766101-
GWHAAZE00000002exon87653228765558-
GWHAAZE00000002CDS87713828771627-
GWHAAZE00000002CDS87705468770666-
GWHAAZE00000002CDS87704128770470-
GWHAAZE00000002CDS87695338769597-
GWHAAZE00000002CDS87693268769419-
GWHAAZE00000002CDS87691638769243-
GWHAAZE00000002CDS87686948768802-
GWHAAZE00000002CDS87675778767649-
GWHAAZE00000002CDS87666548767497-
GWHAAZE00000002CDS87662918766573-
GWHAAZE00000002CDS87660318766101-
GWHAAZE00000002CDS87653228765558-
Transcript Sequence

Network for GWHGAAZE005488

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase152732.40E-71
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyGroup-Pl-3

KEGG pathway

KO Enzyme pathway mapID
K08269ULK2, ATG1 mTOR signaling pathway map04150
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Mitophagy - yeastmap04139
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.859
SRR3591706second leaf10.012
SRR3591707mature leaf13.476
SRR3591708Shoot apex14.608
SRR3591709Stem22.903
SRR3591710White floral bud25.475
SRR3591711White flower30.862
SRR3591712Green floral bud13.349
SRR3591713Yellow flower27.459
SRP173429 SRR8316895Juvenile bud stage 7.472
SRR8316896Juvenile bud stage 9.353
SRR8316897Juvenile bud stage 4.694
SRR8316894Third green stage 5.182
SRR8316900Third green stage 9.315
SRR8316901Third green stage 10.053
SRR8316898Complete white stage 10.251
SRR8316899Complete white stage 19.633
SRR8316903Complete white stage 16.618
SRR8316902Silver flowering stage12.647
SRR8316904Silver flowering stage20.260
SRR8316905Silver flowering stage9.178
SRR8316906Gold flowering stage 27.139
SRR8316907Gold flowering stage 29.090
SRR8316908Gold flowering stage 28.336
SRP132670SRR6706286Control8.484
SRR6706287Light intensity 50%9.635
SRR6706288Light intensity 20%9.953
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.640
CNS0095593Slightly white alabastrum(diploid) 25.144
CNS0095594Slightly white alabastrum(diploid) 35.882
CNS0095595Whole white alabastrum(diploid) 24.669
CNS0095596Whole white alabastrum(diploid) 33.507
CNS0095597Whole white alabastrum(diploid) 45.438
CNS0095598Silvery flower (diploied) 114.200
CNS0095599Silvery flower (diploied) 26.906
CNS0095600Silvery flower (diploied) 317.638
CNS0095601Golden flower (diploid) 18.104
CNS0095602Golden flower (diploid) 216.129
CNS0095603Golden flower (diploid) 315.348
CNS0095604Slightly white alabastrum(tetraploid) 15.921
CNS0095605Slightly white alabastrum(tetraploid) 24.980
CNS0095606Slightly white alabastrum(tetraploid) 39.572
CNS0095607Whole white alabastrum(tetraploid) 14.482
CNS0095608Whole white alabastrum(tetraploid) 24.153
CNS0095609Whole white alabastrum(tetraploid) 36.701
CNS0095610Silvery flower (tetraploid) 119.204
CNS0095611Silvery flower (tetraploid) 212.627
CNS0095612Silvery flower (tetraploid) 317.783
CNS0095613Golden flower (tetraploid) 19.691
CNS0095614Golden flower (tetraploid) 214.609
CNS0095615Golden flower (tetraploid) 320.308
CRA001975CRR073297Stem 110.586
CRR073298Stem 210.370
CRR073299Stem 39.597
CRR073300Leaf 111.775
CRR073301Leaf 29.827
CRR073302Leaf 37.657
CRR073303Juvenile bud 18.156
CRR073304Juvenile bud 27.455
CRR073305Juvenile bud 310.875
CRR073306Third green 113.902
CRR073307Third green 212.205
CRR073308Third green 313.045
CRR073309Second white 113.542
CRR073310Second white 219.711
CRR073311Second white 318.031
CRR073312Silver flowering 114.674
CRR073313Silver flowering 211.899
CRR073314Silver flowering 39.672
CRR073315Gold flowering 17.233
CRR073316Gold flowering 212.629
CRR073317Gold flowering 36.339
CRR073318Tawny withering 111.389
CRR073319Tawny withering 215.596
CRR073320Tawny withering 311.918