Gene detail

Detail information of GWHGAAZE005486

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654234.1	1.2379E-159	PREDICTED: BEL1-like homeodomain protein 9 [Vitis vinifera]
Swissprot	tr\|Q9LZM8\|BLH9_ARATH	7E-84	BEL1-like homeodomain protein 9
trEMBL	tr\|F6HL25\|F6HL25_VITVI	5E-160	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55542.1}
TAIR10	AT5G02030.1	2E-59	POX (plant homeobox) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8740735	8743212	+
GWHAAZE00000002	mRNA	8740735	8743212	+
GWHAAZE00000002	exon	8740735	8740806	+
GWHAAZE00000002	exon	8741639	8742018	+
GWHAAZE00000002	exon	8742139	8742199	+
GWHAAZE00000002	exon	8742673	8743212	+
GWHAAZE00000002	CDS	8740735	8740806	+
GWHAAZE00000002	CDS	8741639	8742018	+
GWHAAZE00000002	CDS	8742139	8742199	+
GWHAAZE00000002	CDS	8742673	8743212	+

Transcript Sequence
>GWHTAAZE005494 ATGTTTTCATGTACTGACGGTGTGGAGTCTGGATTGACAGTGAGTGGTAGGTGTTTGATCAAAAGTGTGTATGTACACAGGAGGTACAAGCAGTACTACCAACAGGTACAAGCAGTTGTAGCATCATTTGAAACCGTACCTGGACTAAGCAATGCTGCTCCATACGCACACTTGGCCTTGAAAGCCATGTCCAAGCATTTCGGGTACTTGAAAAACGCAATCACTGATCAAATTCAGTTCACAACCAAATCTCATGGGCAACTAATTAGCTATGGAAATGATGAAACCCCGAGGTCCATAAACTCCGACAAGGGCTTTTATGGCCAGAAACAAATTCACAATAACTTGGGATTTAACGAACATCAACCTCCAGTTTGGCGGCCCCAAAGGGGACTCCCTGAGCGTGCTGTAACTGTGCTCAGGGCTTGGTTGTTCGAACACTTTCTGCACCCCTATCCTACTGACACGGATAAACTAATGTTGGCTAAACAGACGGGTCTTTCACGGAATCAGGTCTCCAACTGGTTCATCAACGCAAGAGTAAGGCTCTGGAAACCTATGGTGGAAGAAATACACACGCTTGAAACACGCGAAGCTCAAAAAAATTTACAGAGGGATGAGCAAAATGCCAATAGATCAATAAATGGCCATTTTCCTCCGTGCAACTCACTTGTGGCTGAAAATCCATCAACGTCAACCCAAATAGTTCAAGACCTTCCCTTAAAAAGAACAAGAAATGTCTTTTTGAACAATCCTCCTATGGGTATTGAGGAGCCAATGAATTTAATGTACAACCACAATTCATCGGGTCATCAAGAAGATATGGGAGTTGGTACTAGTGCTATTGGGGGAAGTAGCAGCGTTTCTTTAACACTGGGCCTCCATCAGAATAATGGGATTGTGTTCTCGGAACCATTTCCCATTAATGCAGCTCGTCGTTTTGGTCTTGATTCGAGTAGCGAAGGTTTTGTCATGGGCAATTTTGAAGGACAAAATCGACAATTTGGGCGGAGTTATGGTGGAGGGCAGCTTTTACATGATTTTGTTGGCTAG

Network for GWHGAAZE005486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.12	POX	25	75	4.90E-20
PF05920.12	Homeobox_KN	143	182	3.60E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.058
	SRR3591706	second leaf	7.257
	SRR3591707	mature leaf	13.705
	SRR3591708	Shoot apex	13.198
	SRR3591709	Stem	34.065
	SRR3591710	White floral bud	6.851
	SRR3591711	White flower	8.737
	SRR3591712	Green floral bud	8.462
	SRR3591713	Yellow flower	1.522
SRP173429	SRR8316895	Juvenile bud stage	10.663
	SRR8316896	Juvenile bud stage	13.599
	SRR8316897	Juvenile bud stage	5.296
	SRR8316894	Third green stage	4.287
	SRR8316900	Third green stage	9.950
	SRR8316901	Third green stage	11.251
	SRR8316898	Complete white stage	3.131
	SRR8316899	Complete white stage	18.088
	SRR8316903	Complete white stage	5.715
	SRR8316902	Silver flowering stage	1.462
	SRR8316904	Silver flowering stage	2.848
	SRR8316905	Silver flowering stage	0.780
	SRR8316906	Gold flowering stage	1.280
	SRR8316907	Gold flowering stage	2.872
	SRR8316908	Gold flowering stage	2.523
SRP132670	SRR6706286	Control	16.183
	SRR6706287	Light intensity 50%	14.384
	SRR6706288	Light intensity 20%	17.574
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.140
	CNS0095593	Slightly white alabastrum(diploid) 2	11.137
	CNS0095594	Slightly white alabastrum(diploid) 3	11.482
	CNS0095595	Whole white alabastrum(diploid) 2	9.225
	CNS0095596	Whole white alabastrum(diploid) 3	8.631
	CNS0095597	Whole white alabastrum(diploid) 4	8.112
	CNS0095598	Silvery flower (diploied) 1	14.766
	CNS0095599	Silvery flower (diploied) 2	9.691
	CNS0095600	Silvery flower (diploied) 3	6.543
	CNS0095601	Golden flower (diploid) 1	9.086
	CNS0095602	Golden flower (diploid) 2	7.265
	CNS0095603	Golden flower (diploid) 3	7.737
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.962
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.545
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.772
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.544
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.763
	CNS0095610	Silvery flower (tetraploid) 1	6.751
	CNS0095611	Silvery flower (tetraploid) 2	6.247
	CNS0095612	Silvery flower (tetraploid) 3	2.168
	CNS0095613	Golden flower (tetraploid) 1	2.145
	CNS0095614	Golden flower (tetraploid) 2	6.992
	CNS0095615	Golden flower (tetraploid) 3	1.507
CRA001975	CRR073297	Stem 1	10.460
	CRR073298	Stem 2	8.906
	CRR073299	Stem 3	8.286
	CRR073300	Leaf 1	10.314
	CRR073301	Leaf 2	11.295
	CRR073302	Leaf 3	9.140
	CRR073303	Juvenile bud 1	10.382
	CRR073304	Juvenile bud 2	9.219
	CRR073305	Juvenile bud 3	18.753
	CRR073306	Third green 1	0.364
	CRR073307	Third green 2	0.775
	CRR073308	Third green 3	2.069
	CRR073309	Second white 1	0.164
	CRR073310	Second white 2	0.156
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.037
	CRR073313	Silver flowering 2	0.932
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.094
	CRR073316	Gold flowering 2	11.950
	CRR073317	Gold flowering 3	8.933
	CRR073318	Tawny withering 1	16.961
	CRR073319	Tawny withering 2	13.833
	CRR073320	Tawny withering 3	16.924