Gene detail

Detail information of GWHGAAZE005455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278975.1	0	PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Vitis vinifera]
Swissprot	tr\|Q9C774\|PSD7B_ARATH	0	26S proteasome non-ATPase regulatory subunit 7 homolog B
trEMBL	tr\|D7THA1\|D7THA1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30417.3}
TAIR10	AT3G11270.1	4E-161	Mov34/MPN/PAD-1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8241335	8246361	-
GWHAAZE00000002	mRNA	8241335	8246361	-
GWHAAZE00000002	exon	8241335	8241406	-
GWHAAZE00000002	exon	8242339	8242424	-
GWHAAZE00000002	exon	8242517	8242574	-
GWHAAZE00000002	exon	8243305	8243427	-
GWHAAZE00000002	exon	8243580	8243638	-
GWHAAZE00000002	exon	8243750	8243825	-
GWHAAZE00000002	exon	8244029	8244125	-
GWHAAZE00000002	exon	8244559	8244640	-
GWHAAZE00000002	exon	8244725	8244817	-
GWHAAZE00000002	exon	8246175	8246361	-
GWHAAZE00000002	CDS	8246175	8246361	-
GWHAAZE00000002	CDS	8244725	8244817	-
GWHAAZE00000002	CDS	8244559	8244640	-
GWHAAZE00000002	CDS	8244029	8244125	-
GWHAAZE00000002	CDS	8243750	8243825	-
GWHAAZE00000002	CDS	8243580	8243638	-
GWHAAZE00000002	CDS	8243305	8243427	-
GWHAAZE00000002	CDS	8242517	8242574	-
GWHAAZE00000002	CDS	8242339	8242424	-
GWHAAZE00000002	CDS	8241335	8241406	-

Transcript Sequence
>GWHTAAZE005463 ATGGACGTGATAAAGTCACAACAGATATCGGGGAGGCCGATAGAGAAGGTGATAGTACACCCACTGGTGTTGCTAAGCATAGTCGACAACTACAACAGAGTCGCCAAAGACACTCGCAAGCGCGTTGTCGGTGTTCTCCTCGGCAGTTCCTTTAAAGGCACCGTCGATGTCACCAACAGCTATGCTGTGCCTTTCGAAGAAGATGACAAGGATCCTAGCATATGGTTTCTTGACCACAACTACCATGAATCGATGTTTTCTATGTTCAAGAGAATAAATGCCAAGGAACATGTTGTGGGTTGGTATAGCACGGGCCCAAAGCTGAGGGAGAATGACCTAGACATTCACGGTTTATTTACCGATTATGTTCCAAATCCTGTGTTGGTGATAATAGATGTCCAGCCAAAGGAGTTGGGAATACCCACCAAAGCTTACTATGCAGTTGAAGAAGTTAAAGAGAATGCTACTCAAAAAAGCCAGAAGGTTTTTGTTCATGTTCCTTCTGAAATTGCTGCTCATGAAGTGGAGGAAATTGGAGTGGAGCACTTGTTGAGGGATGTGAAAGATACAACCATCAGCACACTTGCAACAGAGGTCACTGGGAAGCTTGCAGCCTTGAAGGGTTTAGATGCACGGTTACGGGAGATACGAGGTTATCTTGATCTTGTTGTTGATGGAAAAGTTCCGTTAAATCACGAGATTCTGTACCATTTGCAGGACGTTTTTAACCTTCTTCCAAATCTCAATGTGGCAGATTTAATCAAGGCATTTGCAGTGAAAACTAATGACCAGATGTTGGTCATCTATCTTTCATCCCTCATCCGCAGTGTAATAGCTCTCCACAACTTGATCAATAACAAGATGCTTAACAAGGAACACGAGAAAGCTGAGGATGCGAAGCCAGCGACAGTACCACCAGTAGGTGGAAGCTGA

Network for GWHGAAZE005455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	15	124	4.40E-30
PF13012.7	MitMem_reg	174	285	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03038	PSMD7, RPN8	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005838	cellular_component	proteasome regulatory particle
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.337
	SRR3591706	second leaf	35.096
	SRR3591707	mature leaf	26.209
	SRR3591708	Shoot apex	55.149
	SRR3591709	Stem	50.466
	SRR3591710	White floral bud	57.017
	SRR3591711	White flower	109.711
	SRR3591712	Green floral bud	54.332
	SRR3591713	Yellow flower	108.121
SRP173429	SRR8316895	Juvenile bud stage	39.544
	SRR8316896	Juvenile bud stage	53.882
	SRR8316897	Juvenile bud stage	29.486
	SRR8316894	Third green stage	21.316
	SRR8316900	Third green stage	59.099
	SRR8316901	Third green stage	56.401
	SRR8316898	Complete white stage	25.862
	SRR8316899	Complete white stage	79.020
	SRR8316903	Complete white stage	44.978
	SRR8316902	Silver flowering stage	44.184
	SRR8316904	Silver flowering stage	51.537
	SRR8316905	Silver flowering stage	26.394
	SRR8316906	Gold flowering stage	115.686
	SRR8316907	Gold flowering stage	92.743
	SRR8316908	Gold flowering stage	114.610
SRP132670	SRR6706286	Control	52.832
	SRR6706287	Light intensity 50%	56.476
	SRR6706288	Light intensity 20%	60.607
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.404
	CNS0095593	Slightly white alabastrum(diploid) 2	56.806
	CNS0095594	Slightly white alabastrum(diploid) 3	47.677
	CNS0095595	Whole white alabastrum(diploid) 2	46.476
	CNS0095596	Whole white alabastrum(diploid) 3	33.418
	CNS0095597	Whole white alabastrum(diploid) 4	34.911
	CNS0095598	Silvery flower (diploied) 1	58.917
	CNS0095599	Silvery flower (diploied) 2	57.816
	CNS0095600	Silvery flower (diploied) 3	99.211
	CNS0095601	Golden flower (diploid) 1	58.741
	CNS0095602	Golden flower (diploid) 2	82.269
	CNS0095603	Golden flower (diploid) 3	76.291
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	80.371
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.476
	CNS0095610	Silvery flower (tetraploid) 1	114.000
	CNS0095611	Silvery flower (tetraploid) 2	103.840
	CNS0095612	Silvery flower (tetraploid) 3	83.289
	CNS0095613	Golden flower (tetraploid) 1	73.616
	CNS0095614	Golden flower (tetraploid) 2	102.430
	CNS0095615	Golden flower (tetraploid) 3	85.521
CRA001975	CRR073297	Stem 1	51.848
	CRR073298	Stem 2	45.980
	CRR073299	Stem 3	56.950
	CRR073300	Leaf 1	54.965
	CRR073301	Leaf 2	49.710
	CRR073302	Leaf 3	55.076
	CRR073303	Juvenile bud 1	52.951
	CRR073304	Juvenile bud 2	44.314
	CRR073305	Juvenile bud 3	50.049
	CRR073306	Third green 1	21.675
	CRR073307	Third green 2	19.808
	CRR073308	Third green 3	23.949
	CRR073309	Second white 1	39.417
	CRR073310	Second white 2	58.438
	CRR073311	Second white 3	39.795
	CRR073312	Silver flowering 1	33.244
	CRR073313	Silver flowering 2	39.459
	CRR073314	Silver flowering 3	42.485
	CRR073315	Gold flowering 1	41.330
	CRR073316	Gold flowering 2	52.103
	CRR073317	Gold flowering 3	28.467
	CRR073318	Tawny withering 1	50.108
	CRR073319	Tawny withering 2	55.254
	CRR073320	Tawny withering 3	53.556