Detail information of GWHGAAZE005454


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278868.20PREDICTED: uncharacterized protein LOC100259616 [Vitis vinifera]
Swissprottr|Q9FX32|SUS6_ARATH0.000000005Sucrose synthase 6
trEMBLtr|F6HKT8|F6HKT8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55508.1}
TAIR10AT5G01220.10sulfoquinovosyldiacylglycerol 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene81432148149258-
GWHAAZE00000002mRNA81432148149258-
GWHAAZE00000002exon81432148143709-
GWHAAZE00000002exon81444638144519-
GWHAAZE00000002exon81450198145096-
GWHAAZE00000002exon81451888145275-
GWHAAZE00000002exon81454398145522-
GWHAAZE00000002exon81456108145665-
GWHAAZE00000002exon81461608146233-
GWHAAZE00000002exon81463318146448-
GWHAAZE00000002exon81470038147073-
GWHAAZE00000002exon81473518147417-
GWHAAZE00000002exon81491438149258-
GWHAAZE00000002CDS81491438149258-
GWHAAZE00000002CDS81473518147417-
GWHAAZE00000002CDS81470038147073-
GWHAAZE00000002CDS81463318146448-
GWHAAZE00000002CDS81461608146233-
GWHAAZE00000002CDS81456108145665-
GWHAAZE00000002CDS81454398145522-
GWHAAZE00000002CDS81451888145275-
GWHAAZE00000002CDS81450198145096-
GWHAAZE00000002CDS81444638144519-
GWHAAZE00000002CDS81432148143709-
Transcript Sequence

Network for GWHGAAZE005454

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13439.7Glyco_transf_4462094.00E-22
PF00534.21Glycos_transf_12293817.90E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06119SQD2 Metabolic pathways map01100
Glycerolipid metabolismmap00561

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.199
SRR3591706second leaf46.147
SRR3591707mature leaf42.005
SRR3591708Shoot apex36.204
SRR3591709Stem32.856
SRR3591710White floral bud23.343
SRR3591711White flower20.308
SRR3591712Green floral bud43.293
SRR3591713Yellow flower31.214
SRP173429 SRR8316895Juvenile bud stage 127.533
SRR8316896Juvenile bud stage 158.303
SRR8316897Juvenile bud stage 75.823
SRR8316894Third green stage 48.340
SRR8316900Third green stage 56.120
SRR8316901Third green stage 57.881
SRR8316898Complete white stage 15.435
SRR8316899Complete white stage 40.309
SRR8316903Complete white stage 20.668
SRR8316902Silver flowering stage25.493
SRR8316904Silver flowering stage31.301
SRR8316905Silver flowering stage21.919
SRR8316906Gold flowering stage 29.885
SRR8316907Gold flowering stage 50.157
SRR8316908Gold flowering stage 37.864
SRP132670SRR6706286Control54.214
SRR6706287Light intensity 50%60.991
SRR6706288Light intensity 20%54.857
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.321
CNS0095593Slightly white alabastrum(diploid) 235.769
CNS0095594Slightly white alabastrum(diploid) 384.886
CNS0095595Whole white alabastrum(diploid) 229.694
CNS0095596Whole white alabastrum(diploid) 332.930
CNS0095597Whole white alabastrum(diploid) 432.144
CNS0095598Silvery flower (diploied) 128.147
CNS0095599Silvery flower (diploied) 226.804
CNS0095600Silvery flower (diploied) 338.674
CNS0095601Golden flower (diploid) 125.834
CNS0095602Golden flower (diploid) 236.656
CNS0095603Golden flower (diploid) 333.629
CNS0095604Slightly white alabastrum(tetraploid) 134.840
CNS0095605Slightly white alabastrum(tetraploid) 237.600
CNS0095606Slightly white alabastrum(tetraploid) 352.273
CNS0095607Whole white alabastrum(tetraploid) 117.554
CNS0095608Whole white alabastrum(tetraploid) 221.209
CNS0095609Whole white alabastrum(tetraploid) 350.678
CNS0095610Silvery flower (tetraploid) 142.069
CNS0095611Silvery flower (tetraploid) 259.748
CNS0095612Silvery flower (tetraploid) 352.052
CNS0095613Golden flower (tetraploid) 126.697
CNS0095614Golden flower (tetraploid) 232.230
CNS0095615Golden flower (tetraploid) 328.012
CRA001975CRR073297Stem 1233.802
CRR073298Stem 2205.732
CRR073299Stem 3305.880
CRR073300Leaf 149.505
CRR073301Leaf 255.121
CRR073302Leaf 355.490
CRR073303Juvenile bud 150.949
CRR073304Juvenile bud 248.253
CRR073305Juvenile bud 356.207
CRR073306Third green 130.271
CRR073307Third green 215.972
CRR073308Third green 322.646
CRR073309Second white 135.013
CRR073310Second white 229.676
CRR073311Second white 330.169
CRR073312Silver flowering 117.177
CRR073313Silver flowering 218.297
CRR073314Silver flowering 324.878
CRR073315Gold flowering 146.012
CRR073316Gold flowering 255.944
CRR073317Gold flowering 333.631
CRR073318Tawny withering 116.155
CRR073319Tawny withering 216.539
CRR073320Tawny withering 315.235