Gene detail

Detail information of GWHGAAZE005434

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABO15645.1	1.44465E-79	carboxyltransferase alpha subunit [Jatropha curcas]
Swissprot	tr\|Q9LD43\|ACCA_ARATH	7E-76	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|D2CGD8\|D2CGD8_JATCU	5E-80	Carboxyltransferase alpha subunit {ECO:0000313\|EMBL:ABO15645.1} (Fragment)
TAIR10	AT2G38040.2	1E-59	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7862061	7863597	+
GWHAAZE00000002	mRNA	7862061	7863597	+
GWHAAZE00000002	exon	7862061	7862126	+
GWHAAZE00000002	exon	7862587	7862698	+
GWHAAZE00000002	exon	7862869	7862968	+
GWHAAZE00000002	exon	7863125	7863236	+
GWHAAZE00000002	exon	7863323	7863477	+
GWHAAZE00000002	exon	7863564	7863597	+
GWHAAZE00000002	CDS	7862061	7862126	+
GWHAAZE00000002	CDS	7862587	7862698	+
GWHAAZE00000002	CDS	7862869	7862968	+
GWHAAZE00000002	CDS	7863125	7863236	+
GWHAAZE00000002	CDS	7863323	7863477	+
GWHAAZE00000002	CDS	7863564	7863597	+

Transcript Sequence
>GWHTAAZE005440 ATGGCGATCAAAACTGGTCTAGACTTCAGCGATCAGATTGTCTCTCTAGAAAAAAACTATCAGCAGGCTCTGAAAAAACTCTACACGCATCTGACCCCCATACAACGTGTGTTGTGCGACACCCCAACAGGCCAACTTTTCTTGACCATTTCTTTAATAATATTACTGAAAAGATCTGAGCTTCATGGCAATCAGGTAGGGTATGATGATCCTGCAATTGTCACTGGTCTTGGAACAATAAACGGCAGAAGCTACATGTTCATTGGTCACCAGAAAAGTTACCGGAAGGCTCTACCCATGATGTATTATGCAGATCATTATGGATTCCCTGTTGTTACTTTTGTTGACACTCGGGAATTTGCAGACCTTAAATCAGAGGAACTAGGCCAACGTGAAGCGATTGCGTGCAACTTGAGGACTATGTTTGGTCTGAAGTTACCAATTGTTTCCATTGTTCTGGGAGAAGGTGGCTCTGGTGGTGGTTCTGGTGGTGCTCTTGGGAATAAATTATTAACACTTGAAAATTCAGTCTTCTACGTTGCCAGTCCAATGGTAGATAAGTTGAAATTAGCGACTTAG

Network for GWHGAAZE005434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03255.15	ACCA	4	92	6.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01962	accA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0016874	molecular_function	ligase activity
GO:0003989	molecular_function	acetyl-CoA carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.137
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.003
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.103
	SRR3591713	Yellow flower	0.046
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.005
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.020
	SRR6706287	Light intensity 50%	0.018
	SRR6706288	Light intensity 20%	0.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.284
	CNS0095594	Slightly white alabastrum(diploid) 3	0.362
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.089
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.113
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.129
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.116
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.001
	CRR073318	Tawny withering 1	0.061
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.113