Gene detail

Detail information of GWHGAAZE005430

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009785651.1	4.3426E-155	PREDICTED: ataxin-3 homolog [Nicotiana sylvestris]
Swissprot	tr\|Q9M391\|ATX3H_ARATH	4E-123	Ataxin-3 homolog
trEMBL	tr\|V4SZ47\|V4SZ47_9ROSI	7E-151	Uncharacterized protein {ECO:0000313\|EMBL:ESR42516.1}
TAIR10	AT3G54130.1	3E-93	Josephin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7833099	7837431	-
GWHAAZE00000002	mRNA	7833099	7837431	-
GWHAAZE00000002	exon	7837186	7837431	-
GWHAAZE00000002	exon	7833099	7833668	-
GWHAAZE00000002	CDS	7837186	7837431	-
GWHAAZE00000002	CDS	7833099	7833668	-

Transcript Sequence
>GWHTAAZE005436 ATGGAAGCACCGAGCAACGGAGGAATGTTGTACCACGAGGTACAAGAATCGAAGCTGTGCGCTGTGCATTGCGTGAACACCGTGTTGCAGGGACCCTTCTTCTCCGAGTTCGATTTGGCCGCTCTCGCTTCCGATCTCGATCTCAAGGAGCGTCAGATGATGCTCGAAGGTCGCGGCTCCGCCGGCGGCGACTTTCTACCAGAAGAGTCTCACAACGTTTCCATGGACGGCGATTTCAGTATCCAGGTTTTAGAAAAGGCTTTAGAGGTGTGGGACCTACAAGTCATTCCGCTCAACTGCCCTGTTGCGGAGCCCGCTCAGATCGACCCTGAACTTGAGAATGCATTCATCTGTCATTTGCAGGACCACTGGTTCTGCATCAGGAAAGTCAACGGAGAATGGTACAACTTCGACAGCCTGTACGCTGCACCTGAACACCTCTCAAAGTTTTACCTCTCAGCCTATTTAGACACACTGAAGGGCTTTGGGTGGAGCATTTTCCTCGTTAGGGGCAACTTTCCAAAGGAGTGCCCTGTAACATCCTCCGAAGCTTCTAATGTGTATGGGCAGTGGCTATTACCTGAAGATGCAGAGAGAATAACTAAGTCTTGCAACTCGGCACAGAGGCAGCCTCATAGAACCGTCCAAAGCCAACAGCCGGCTGATCCATATGGTGGTCAAATGCTATTAGATGCAGAAGACGAAGATTTGAAGGCGGCAATAGCAGCCAGCTTGATGGAATCCCCGCCGGAGGCCACTGCTGGAGTGGGCCCCTCAGAAAATGAAAAGAAGAGCAACAGTGGTGAAAAAGCATGA

Network for GWHGAAZE005430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02099.18	Josephin	15	170	1.00E-48

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	josephin

KEGG pathway

KO	Enzyme	pathway	mapID
K11863	ATXN3, MJD	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.961
	SRR3591706	second leaf	14.876
	SRR3591707	mature leaf	15.235
	SRR3591708	Shoot apex	17.463
	SRR3591709	Stem	22.460
	SRR3591710	White floral bud	21.372
	SRR3591711	White flower	28.332
	SRR3591712	Green floral bud	24.927
	SRR3591713	Yellow flower	29.453
SRP173429	SRR8316895	Juvenile bud stage	18.195
	SRR8316896	Juvenile bud stage	30.604
	SRR8316897	Juvenile bud stage	10.731
	SRR8316894	Third green stage	10.502
	SRR8316900	Third green stage	40.029
	SRR8316901	Third green stage	40.572
	SRR8316898	Complete white stage	26.434
	SRR8316899	Complete white stage	59.495
	SRR8316903	Complete white stage	27.254
	SRR8316902	Silver flowering stage	18.787
	SRR8316904	Silver flowering stage	22.201
	SRR8316905	Silver flowering stage	12.494
	SRR8316906	Gold flowering stage	39.135
	SRR8316907	Gold flowering stage	39.464
	SRR8316908	Gold flowering stage	41.852
SRP132670	SRR6706286	Control	41.432
	SRR6706287	Light intensity 50%	41.581
	SRR6706288	Light intensity 20%	41.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.214
	CNS0095593	Slightly white alabastrum(diploid) 2	27.717
	CNS0095594	Slightly white alabastrum(diploid) 3	30.891
	CNS0095595	Whole white alabastrum(diploid) 2	30.654
	CNS0095596	Whole white alabastrum(diploid) 3	31.797
	CNS0095597	Whole white alabastrum(diploid) 4	26.909
	CNS0095598	Silvery flower (diploied) 1	17.562
	CNS0095599	Silvery flower (diploied) 2	22.491
	CNS0095600	Silvery flower (diploied) 3	40.530
	CNS0095601	Golden flower (diploid) 1	22.443
	CNS0095602	Golden flower (diploid) 2	34.722
	CNS0095603	Golden flower (diploid) 3	35.227
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.016
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.838
	CNS0095610	Silvery flower (tetraploid) 1	53.159
	CNS0095611	Silvery flower (tetraploid) 2	48.926
	CNS0095612	Silvery flower (tetraploid) 3	40.904
	CNS0095613	Golden flower (tetraploid) 1	38.202
	CNS0095614	Golden flower (tetraploid) 2	45.395
	CNS0095615	Golden flower (tetraploid) 3	44.208
CRA001975	CRR073297	Stem 1	30.617
	CRR073298	Stem 2	30.828
	CRR073299	Stem 3	38.893
	CRR073300	Leaf 1	37.261
	CRR073301	Leaf 2	39.666
	CRR073302	Leaf 3	46.360
	CRR073303	Juvenile bud 1	46.008
	CRR073304	Juvenile bud 2	51.640
	CRR073305	Juvenile bud 3	36.642
	CRR073306	Third green 1	35.910
	CRR073307	Third green 2	34.625
	CRR073308	Third green 3	29.133
	CRR073309	Second white 1	36.984
	CRR073310	Second white 2	34.684
	CRR073311	Second white 3	22.591
	CRR073312	Silver flowering 1	28.626
	CRR073313	Silver flowering 2	36.822
	CRR073314	Silver flowering 3	23.087
	CRR073315	Gold flowering 1	33.525
	CRR073316	Gold flowering 2	29.695
	CRR073317	Gold flowering 3	35.071
	CRR073318	Tawny withering 1	37.306
	CRR073319	Tawny withering 2	28.177
	CRR073320	Tawny withering 3	34.025