Gene detail

Detail information of GWHGAAZE005419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06496.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|C0LGG8\|Y5343_ARATH	6E-96	Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (Precursor)
trEMBL	tr\|A0A068UDC3\|A0A068UDC3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06496.1}
TAIR10	AT3G09010.1	2E-125	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7649039	7651510	+
GWHAAZE00000002	mRNA	7649039	7651510	+
GWHAAZE00000002	exon	7649039	7649072	+
GWHAAZE00000002	exon	7649778	7649890	+
GWHAAZE00000002	exon	7650087	7650243	+
GWHAAZE00000002	exon	7650439	7650694	+
GWHAAZE00000002	exon	7650856	7651006	+
GWHAAZE00000002	exon	7651121	7651510	+
GWHAAZE00000002	CDS	7649039	7649072	+
GWHAAZE00000002	CDS	7649778	7649890	+
GWHAAZE00000002	CDS	7650087	7650243	+
GWHAAZE00000002	CDS	7650439	7650694	+
GWHAAZE00000002	CDS	7650856	7651006	+
GWHAAZE00000002	CDS	7651121	7651510	+

Transcript Sequence
>GWHTAAZE005425 CTAGTTGATTTGATCGAGGAAGAGATGCGATTACAGATTGCAACAAACAATGTAAGGCTATTCTCCTATAACTCATTGAGATCAGCAACAGGCAACTTCCATCCCTCGAGCAGAATAGGAGGCGGTGGTTTTGGAGTTGTCTATCGGGGAGTTTTGAGAGATGGTACTTGTGTTGCCATCAAGGCCCTTTCTGCGGAATCAAAACAGGGGACTGGTGAATTCTTGACCGAGATTAATGTGATATCAAATATCAGACATCCAAACCTTGTTCAACTGATTGGTTGTTGTGTGGAGGGCAGCAATCTGAACTCTTCAGCTTCAGGTTCAAAAAGTAAACGAGTTCATCTGGATTGGCCGAAGAGGGCTGTTATTTGTGTCGGCACAGCCTCAGGTCTTGCATTTCTTCATGGGGAAGCTGATCCACATATTGTCCACCGGGATATTAAGGCCAGCAATATACTTCTGGATGAAAATTTTCATGCTAAAATTGGAGATTTTGGGCTGGCAAAACTTTTCCCCGACAATGTCACTCATGTTAGTACTCGGGTAGCAGGAACAGTGGGATACCTTGCTCCTGAGTACGCCTTGTTAGGACAACTTACGAAGAAGGCAGATGTGTATAGTTTTGGAGTGCTTATACTTGAAATAATTAGTGGCAGAAGTAGTAGCAAGGCAGCATTTGGGGAAGATCTCTTGGTCCTTGTGGAATGGACATGGAAGTTAAGAGAAGAAGAACGGCTTCTAGAGATTGTTGATCCCGAACTGACAGAATATCCGGAACACGAGGTAATGCGCTTCATTAAGGTTGCGCTCTTTTGTACTCAATCAGCTTCTTACCAAAGACCTCCAATGAAGCAAGTGCTCGAGATGCTGTCCAAGGAAGTTAATCTTAACGAGAAGTTATTAACAGAGCCAGGCGTGTATAGACCACAGACTTCTAGGCAATCTGTTGGTGGTAGTGGCGGTGGTAGTGGTAGTGGTAGTTCGACGGGAACATCATCCTCTCAAGCAAACAAAGGCAAGCAATCAGTAAACCCATCTGTATCATTAACTCTCCAGGTAGATAGTTCTCAAGATCTGACCCAGATGATTCCTAGATGA

Network for GWHGAAZE005419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	37	291	6.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.022
	SRR3591706	second leaf	6.481
	SRR3591707	mature leaf	1.472
	SRR3591708	Shoot apex	9.306
	SRR3591709	Stem	15.623
	SRR3591710	White floral bud	6.864
	SRR3591711	White flower	11.381
	SRR3591712	Green floral bud	6.961
	SRR3591713	Yellow flower	13.765
SRP173429	SRR8316895	Juvenile bud stage	9.717
	SRR8316896	Juvenile bud stage	10.889
	SRR8316897	Juvenile bud stage	5.701
	SRR8316894	Third green stage	2.504
	SRR8316900	Third green stage	7.244
	SRR8316901	Third green stage	7.850
	SRR8316898	Complete white stage	2.653
	SRR8316899	Complete white stage	13.207
	SRR8316903	Complete white stage	3.578
	SRR8316902	Silver flowering stage	3.548
	SRR8316904	Silver flowering stage	3.817
	SRR8316905	Silver flowering stage	2.912
	SRR8316906	Gold flowering stage	9.939
	SRR8316907	Gold flowering stage	6.354
	SRR8316908	Gold flowering stage	8.930
SRP132670	SRR6706286	Control	6.206
	SRR6706287	Light intensity 50%	6.558
	SRR6706288	Light intensity 20%	5.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.938
	CNS0095593	Slightly white alabastrum(diploid) 2	6.969
	CNS0095594	Slightly white alabastrum(diploid) 3	7.417
	CNS0095595	Whole white alabastrum(diploid) 2	7.921
	CNS0095596	Whole white alabastrum(diploid) 3	4.399
	CNS0095597	Whole white alabastrum(diploid) 4	4.949
	CNS0095598	Silvery flower (diploied) 1	9.764
	CNS0095599	Silvery flower (diploied) 2	11.611
	CNS0095600	Silvery flower (diploied) 3	8.413
	CNS0095601	Golden flower (diploid) 1	10.635
	CNS0095602	Golden flower (diploid) 2	11.492
	CNS0095603	Golden flower (diploid) 3	10.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.529
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.691
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.420
	CNS0095610	Silvery flower (tetraploid) 1	4.394
	CNS0095611	Silvery flower (tetraploid) 2	7.149
	CNS0095612	Silvery flower (tetraploid) 3	21.344
	CNS0095613	Golden flower (tetraploid) 1	6.757
	CNS0095614	Golden flower (tetraploid) 2	5.874
	CNS0095615	Golden flower (tetraploid) 3	8.260
CRA001975	CRR073297	Stem 1	8.568
	CRR073298	Stem 2	8.224
	CRR073299	Stem 3	7.143
	CRR073300	Leaf 1	6.012
	CRR073301	Leaf 2	8.257
	CRR073302	Leaf 3	4.073
	CRR073303	Juvenile bud 1	4.263
	CRR073304	Juvenile bud 2	3.228
	CRR073305	Juvenile bud 3	5.227
	CRR073306	Third green 1	5.237
	CRR073307	Third green 2	6.066
	CRR073308	Third green 3	5.668
	CRR073309	Second white 1	6.835
	CRR073310	Second white 2	6.391
	CRR073311	Second white 3	5.470
	CRR073312	Silver flowering 1	19.470
	CRR073313	Silver flowering 2	14.665
	CRR073314	Silver flowering 3	10.873
	CRR073315	Gold flowering 1	2.133
	CRR073316	Gold flowering 2	3.200
	CRR073317	Gold flowering 3	1.463
	CRR073318	Tawny withering 1	8.632
	CRR073319	Tawny withering 2	7.753
	CRR073320	Tawny withering 3	6.138