Gene detail

Detail information of GWHGAAZE005412

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009778966.1	2.0633E-136	PREDICTED: B3 domain-containing protein Os01g0234100-like [Nicotiana sylvestris]
Swissprot	tr\|Q0JP99\|Y1341_ORYSJ	5E-90	B3 domain-containing protein Os01g0234100
trEMBL	tr\|M1BY60\|M1BY60_SOLTU	8E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400055571}
TAIR10	AT3G19184.1	4E-33	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7568054	7569910	-
GWHAAZE00000002	mRNA	7568054	7569910	-
GWHAAZE00000002	exon	7569858	7569910	-
GWHAAZE00000002	exon	7569578	7569692	-
GWHAAZE00000002	exon	7569268	7569474	-
GWHAAZE00000002	exon	7568882	7568975	-
GWHAAZE00000002	exon	7568054	7568745	-
GWHAAZE00000002	CDS	7569858	7569910	-
GWHAAZE00000002	CDS	7569578	7569692	-
GWHAAZE00000002	CDS	7569268	7569474	-
GWHAAZE00000002	CDS	7568882	7568975	-
GWHAAZE00000002	CDS	7568054	7568745	-

Transcript Sequence
>GWHTAAZE005418 ATGGTTGGTTTTGTCAAGCAGGTGATTTCTACAACTCCCAATAAATCAACGAGAGCCAAATGTTCACCAATGGAGAGAGCAGAGGAGGTTCAAGCAAATCTACCATCCAAATTCCCCTCTTTTATAAAGCTTATGCTCCCTTCACATGTTGCTGGTGGATTCTGGCTGAGTTTCCCTAAGCAATTTTGCGATTCGCATATGCCAAAGCATGATGAAAAAGTAGTATTAGTGAATGAGAGTGAGGAGAAGTATGAAACAAAGTATCTTGTGGAGAAGAATGGATTGAGTGCGGGATGGAGAGGGTTCTCCATTGCACACAAATTGCTTGAGAAAGATGTTTTGGTTTTCCAGTTGATTCAACCTTGCGTATTTAAGGTGTACATCGTAAGAGCAAATGGTTTAACAGAAATTGATGGAGCCATTGGCCTTCTAACTCTAGACCCTTGTAGTGCAAAACCACTTAACATTGGGGAGATATATTCAGAGCCAGTACTCTCCCTAGAAGAAAATCATCAAGATAATTCCATGTTGGCCTTAAATACGGACCAATCTGAAAATGACAGCGACGAATTTGGCTCAGAGATTTTCCAAGGTATAACATTCTCACAATCCGTCGCTGATTTCAAAGACGTAAAGGGTATAGAAGATTTCAACATTCTTGTCGATGGTCTAATCATAAACTCTGTAATGCCCTCACATCTTCGGATCAAATACTACGAGCTCTGTTGCAGCCAAAAATCATATCTTCATGAGAATCTCCTTGAGGGCCTCAACTTTAAACTGACTGTCGGGATAATAAATGAAACTGTTAACATAGCTGACGCCATAAGAGCTTGCAAGATTAGTAGCACTACTTGTGGAGATCATATGAAGGTGTGGGATAAGACCCTAAAGGCATTTGAGGAGTTGGGAATGAAAGTTGGGTTTTTGCGAGCTCGGATAACTAAGCTTGTGGGGCTCCTTTCAGTGGAGTCGAAGGAGGTGATGATGGAAGCAAAGAGGGTTGAGAAAGAGAAAGCTGAAGAGGAGATGAGGAGTATTGAGAGGAGGCTGGTGAATGTGAAGGAGGTGATTAGGAGTATTGGGGCTGAGGTTGAGACTTTGAAGAAGGTGAAAGGGACTGAGGTTTTGTTTGAAGAAGAGGCTAATGCACCATGGTGA

Network for GWHGAAZE005412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	41	131	4.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.890
	SRR3591706	second leaf	1.031
	SRR3591707	mature leaf	2.695
	SRR3591708	Shoot apex	9.765
	SRR3591709	Stem	1.710
	SRR3591710	White floral bud	5.305
	SRR3591711	White flower	4.083
	SRR3591712	Green floral bud	5.822
	SRR3591713	Yellow flower	2.375
SRP173429	SRR8316895	Juvenile bud stage	3.367
	SRR8316896	Juvenile bud stage	4.186
	SRR8316897	Juvenile bud stage	2.509
	SRR8316894	Third green stage	2.399
	SRR8316900	Third green stage	6.543
	SRR8316901	Third green stage	5.752
	SRR8316898	Complete white stage	1.736
	SRR8316899	Complete white stage	8.584
	SRR8316903	Complete white stage	1.776
	SRR8316902	Silver flowering stage	0.579
	SRR8316904	Silver flowering stage	1.023
	SRR8316905	Silver flowering stage	0.612
	SRR8316906	Gold flowering stage	0.807
	SRR8316907	Gold flowering stage	1.773
	SRR8316908	Gold flowering stage	1.268
SRP132670	SRR6706286	Control	3.463
	SRR6706287	Light intensity 50%	4.031
	SRR6706288	Light intensity 20%	3.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.137
	CNS0095593	Slightly white alabastrum(diploid) 2	3.362
	CNS0095594	Slightly white alabastrum(diploid) 3	1.474
	CNS0095595	Whole white alabastrum(diploid) 2	4.183
	CNS0095596	Whole white alabastrum(diploid) 3	4.507
	CNS0095597	Whole white alabastrum(diploid) 4	3.299
	CNS0095598	Silvery flower (diploied) 1	3.605
	CNS0095599	Silvery flower (diploied) 2	2.062
	CNS0095600	Silvery flower (diploied) 3	1.813
	CNS0095601	Golden flower (diploid) 1	2.887
	CNS0095602	Golden flower (diploid) 2	1.183
	CNS0095603	Golden flower (diploid) 3	2.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.916
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.839
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.950
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.368
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.977
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.078
	CNS0095610	Silvery flower (tetraploid) 1	3.102
	CNS0095611	Silvery flower (tetraploid) 2	4.646
	CNS0095612	Silvery flower (tetraploid) 3	3.182
	CNS0095613	Golden flower (tetraploid) 1	1.578
	CNS0095614	Golden flower (tetraploid) 2	2.205
	CNS0095615	Golden flower (tetraploid) 3	0.574
CRA001975	CRR073297	Stem 1	3.560
	CRR073298	Stem 2	2.672
	CRR073299	Stem 3	2.169
	CRR073300	Leaf 1	2.912
	CRR073301	Leaf 2	3.431
	CRR073302	Leaf 3	2.863
	CRR073303	Juvenile bud 1	2.407
	CRR073304	Juvenile bud 2	1.083
	CRR073305	Juvenile bud 3	3.176
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	0.244
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.047
	CRR073313	Silver flowering 2	0.046
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.244
	CRR073316	Gold flowering 2	1.278
	CRR073317	Gold flowering 3	0.259
	CRR073318	Tawny withering 1	0.980
	CRR073319	Tawny withering 2	0.765
	CRR073320	Tawny withering 3	1.028