Gene detail

Detail information of GWHGAAZE005402

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009588980.1	PREDICTED: calcium-dependent protein kinase 13 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8W4I7\|CDPKD_ARATH	Calcium-dependent protein kinase 13
trEMBL	tr\|K4CQ45\|K4CQ45_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g005550.2.1}
TAIR10	AT3G51850.1	calcium-dependent protein kinase 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7398105	7404223	+
GWHAAZE00000002	mRNA	7398105	7404223	+
GWHAAZE00000002	exon	7398105	7398735	+
GWHAAZE00000002	exon	7400609	7400752	+
GWHAAZE00000002	exon	7400991	7401143	+
GWHAAZE00000002	exon	7402036	7402151	+
GWHAAZE00000002	exon	7402240	7402407	+
GWHAAZE00000002	exon	7403759	7403992	+
GWHAAZE00000002	exon	7404074	7404223	+
GWHAAZE00000002	CDS	7398105	7398735	+
GWHAAZE00000002	CDS	7400609	7400752	+
GWHAAZE00000002	CDS	7400991	7401143	+
GWHAAZE00000002	CDS	7402036	7402151	+
GWHAAZE00000002	CDS	7402240	7402407	+
GWHAAZE00000002	CDS	7403759	7403992	+
GWHAAZE00000002	CDS	7404074	7404223	+

Transcript Sequence
>GWHTAAZE005408 ATGGGAAACTGTTGTAGATCTCCTGCTGCTGTCGCCAGAGAGGACGTCAAGTCTTCCAATTTCTCCGGCCACGATCAGGGACGGAAGGACCGTTCCGTCACCGGCGCTGCAAAGAAGACAATCACCGTGTTAACAGATGTGTCCAAGGAGAACATTGACGACAAGTACTTACTGGATAGAGAACTTGGTCGTGGCGAATTTGGAGTAACCTATTTATGTATCGATCGTAATTCCAAGGATATGTTGGCCTGTAAATCGATTTCCAAGAGGAAGCTAAGGACAGCTGTGGATGTGGATGATGTGAGGAGAGAAGTGGCGATTATGAAGCACTTGCCGGATAATTCCAGTATTGTCAAGTTTAGAGAGGCTTGTGAGGATGACAATGCGGTGCATTTGGTGATGGAGTTGTGTGAGGGTGGTGAACTGTTTGATCGGATTGTTGCGCGAGGGCATTACACTGAGCGTGCTGCGGCTGCTGTTACACGGACGATTGTGGAGGTTGTTCAGCTTTGTCACAAGCATGGAGTGATTCACAGGGACTTGAAGCCGGAGAACTTCTTGTTTGCGAATAAGAAGGAAAATTCACCTTTGAAAGCTATCGATTTTGGATTGTCAATCTTCTTCAAACCAGGTGAAAGGTTCTCTGAAATTGTTGGAAGCCCATATTACATGGCTCCCGAAGTGCTCAAGCGGAACTATGGACCGGAGATAGATATATGGAGTGCAGGAGTGATTCTTTATATTTTATTGTGTGGAGTGCCTCCATTTTGGGCTGAGTCTGAACAAGGGGTTGCCCAGGCCATTCTGCGGGGGCTAATAGATTTCAAACGGGAACCCTGGCCAAGTGTTTCAGAAGGGGCTAAGAGCCTTGTCAGTCAGATGTTGGAGCCAGATCCAAAGGTTCGCCTAACTGCAAAACAGGTGCTAGAGCATCCTTGGCTTCAAAATGCTAAAAAGGCTCCAAATGTTCCTCTTGGAGATGTTGTGAAGTCCAGACTCAAGCAGTTCTCGATGATGAATAGGTTCAAGAGAAAGGCCCTGAGGGTTATTGCTGATTTCCTATCCAATGAAGAAGTTGAAGACATCAAGGAATTGTTCAAAAAGATTGACACTGATAATGACGATATAATTACAATTGAGGAACTAAAATCTGGACTTCAGAAGTTCAGTTCGCAGCTTGCGGAATCTGAAGTACAGTTGCTTATTGAAGCTGTAGATACTAACGGGAAAGGAACCATAGACTATGGAGAATTTGTTGCAATTTCGCTCCACCTAAAAAGAATGGCGAATGACGAGCATCTTCACAAGGCCTTCTCTTACTTCGATAAGGATGGTAGTGGCTACATCGATCCAGATGAGCTTCGTGATGCCTTAATGGAAGATGGAGGAGCTGATGATTGTACAGATGTCGCCAATGACATCTTCCACGAAGTTGACACTGACAAGGATGGTCTAATCAGCTATGAGGAATTTGCGGCCATGATGAAAACTGGGACAGATTGGAGAAAGGCGTCCCGGCATTACTCAAGAGGGAGGTTTAACAGTCTAAGTGTGAAGCTTATGAAAGATGGTTCTCTCAACTTGGGGAGTGAGTAA

Network for GWHGAAZE005402

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	58	314	1.30E-72
PF13499.7	EF-hand_7	360	421	6.80E-11
PF13499.7	EF-hand_7	432	496	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.913
	SRR3591706	second leaf	22.678
	SRR3591707	mature leaf	15.331
	SRR3591708	Shoot apex	36.018
	SRR3591709	Stem	27.493
	SRR3591710	White floral bud	29.480
	SRR3591711	White flower	20.953
	SRR3591712	Green floral bud	40.832
	SRR3591713	Yellow flower	16.134
SRP173429	SRR8316895	Juvenile bud stage	24.765
	SRR8316896	Juvenile bud stage	28.974
	SRR8316897	Juvenile bud stage	14.234
	SRR8316894	Third green stage	16.829
	SRR8316900	Third green stage	46.198
	SRR8316901	Third green stage	44.099
	SRR8316898	Complete white stage	10.697
	SRR8316899	Complete white stage	72.304
	SRR8316903	Complete white stage	16.227
	SRR8316902	Silver flowering stage	6.450
	SRR8316904	Silver flowering stage	9.313
	SRR8316905	Silver flowering stage	4.049
	SRR8316906	Gold flowering stage	14.261
	SRR8316907	Gold flowering stage	14.590
	SRR8316908	Gold flowering stage	11.130
SRP132670	SRR6706286	Control	51.604
	SRR6706287	Light intensity 50%	57.194
	SRR6706288	Light intensity 20%	60.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.988
	CNS0095593	Slightly white alabastrum(diploid) 2	30.219
	CNS0095594	Slightly white alabastrum(diploid) 3	22.857
	CNS0095595	Whole white alabastrum(diploid) 2	24.331
	CNS0095596	Whole white alabastrum(diploid) 3	19.854
	CNS0095597	Whole white alabastrum(diploid) 4	18.938
	CNS0095598	Silvery flower (diploied) 1	20.886
	CNS0095599	Silvery flower (diploied) 2	16.587
	CNS0095600	Silvery flower (diploied) 3	18.185
	CNS0095601	Golden flower (diploid) 1	13.411
	CNS0095602	Golden flower (diploid) 2	18.432
	CNS0095603	Golden flower (diploid) 3	16.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.982
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.689
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.900
	CNS0095610	Silvery flower (tetraploid) 1	15.466
	CNS0095611	Silvery flower (tetraploid) 2	18.491
	CNS0095612	Silvery flower (tetraploid) 3	9.755
	CNS0095613	Golden flower (tetraploid) 1	4.129
	CNS0095614	Golden flower (tetraploid) 2	10.462
	CNS0095615	Golden flower (tetraploid) 3	3.243
CRA001975	CRR073297	Stem 1	60.740
	CRR073298	Stem 2	59.811
	CRR073299	Stem 3	52.245
	CRR073300	Leaf 1	73.901
	CRR073301	Leaf 2	74.176
	CRR073302	Leaf 3	74.366
	CRR073303	Juvenile bud 1	71.539
	CRR073304	Juvenile bud 2	54.432
	CRR073305	Juvenile bud 3	79.979
	CRR073306	Third green 1	10.310
	CRR073307	Third green 2	9.337
	CRR073308	Third green 3	12.335
	CRR073309	Second white 1	7.440
	CRR073310	Second white 2	8.960
	CRR073311	Second white 3	6.133
	CRR073312	Silver flowering 1	4.379
	CRR073313	Silver flowering 2	4.161
	CRR073314	Silver flowering 3	3.850
	CRR073315	Gold flowering 1	29.545
	CRR073316	Gold flowering 2	37.638
	CRR073317	Gold flowering 3	22.449
	CRR073318	Tawny withering 1	36.718
	CRR073319	Tawny withering 2	29.399
	CRR073320	Tawny withering 3	29.759