Detail information of GWHGAAZE005393


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011077538.10PREDICTED: AMP deaminase-like isoform X1 [Sesamum indicum]
Swissprottr|O80452|AMPD_ARATH0AMP deaminase
trEMBLtr|D7SY29|D7SY29_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22812.3}
TAIR10AT2G38280.20AMP deaminase, putative / myoadenylate deaminase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene72234887235402+
GWHAAZE00000002mRNA72234887235402+
GWHAAZE00000002exon72234887223893+
GWHAAZE00000002exon72258687226052+
GWHAAZE00000002exon72262947226474+
GWHAAZE00000002exon72269707227148+
GWHAAZE00000002exon72273027227353+
GWHAAZE00000002exon72274477227574+
GWHAAZE00000002exon72276817227860+
GWHAAZE00000002exon72281067228173+
GWHAAZE00000002exon72283097228451+
GWHAAZE00000002exon72290307229091+
GWHAAZE00000002exon72299287230041+
GWHAAZE00000002exon72315937231733+
GWHAAZE00000002exon72334947233646+
GWHAAZE00000002exon72338507233903+
GWHAAZE00000002exon72339947234104+
GWHAAZE00000002exon72342077234380+
GWHAAZE00000002exon72344597234539+
GWHAAZE00000002exon72351187235216+
GWHAAZE00000002exon72353347235402+
GWHAAZE00000002CDS72234887223893+
GWHAAZE00000002CDS72258687226052+
GWHAAZE00000002CDS72262947226474+
GWHAAZE00000002CDS72269707227148+
GWHAAZE00000002CDS72273027227353+
GWHAAZE00000002CDS72274477227574+
GWHAAZE00000002CDS72276817227860+
GWHAAZE00000002CDS72281067228173+
GWHAAZE00000002CDS72283097228451+
GWHAAZE00000002CDS72290307229091+
GWHAAZE00000002CDS72299287230041+
GWHAAZE00000002CDS72315937231733+
GWHAAZE00000002CDS72334947233646+
GWHAAZE00000002CDS72338507233903+
GWHAAZE00000002CDS72339947234104+
GWHAAZE00000002CDS72342077234380+
GWHAAZE00000002CDS72344597234539+
GWHAAZE00000002CDS72351187235216+
GWHAAZE00000002CDS72353347235402+
Transcript Sequence

Network for GWHGAAZE005393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00962.23A_deaminase4048094.40E-127
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01490AMPD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0032264biological_processIMP salvage
GO:0009168biological_processpurine ribonucleoside monophosphate biosynthetic process
GO:0003876molecular_functionAMP deaminase activity
GO:0019239molecular_functiondeaminase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005393.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.917
SRR3591706second leaf13.481
SRR3591707mature leaf27.310
SRR3591708Shoot apex19.502
SRR3591709Stem29.171
SRR3591710White floral bud28.705
SRR3591711White flower29.848
SRR3591712Green floral bud24.200
SRR3591713Yellow flower18.900
SRP173429 SRR8316895Juvenile bud stage 19.725
SRR8316896Juvenile bud stage 21.837
SRR8316897Juvenile bud stage 10.833
SRR8316894Third green stage 12.655
SRR8316900Third green stage 35.770
SRR8316901Third green stage 28.550
SRR8316898Complete white stage 11.009
SRR8316899Complete white stage 46.746
SRR8316903Complete white stage 26.455
SRR8316902Silver flowering stage10.484
SRR8316904Silver flowering stage16.890
SRR8316905Silver flowering stage8.693
SRR8316906Gold flowering stage 19.643
SRR8316907Gold flowering stage 20.734
SRR8316908Gold flowering stage 19.310
SRP132670SRR6706286Control32.080
SRR6706287Light intensity 50%30.111
SRR6706288Light intensity 20%32.085
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.674
CNS0095593Slightly white alabastrum(diploid) 213.889
CNS0095594Slightly white alabastrum(diploid) 314.806
CNS0095595Whole white alabastrum(diploid) 213.631
CNS0095596Whole white alabastrum(diploid) 312.066
CNS0095597Whole white alabastrum(diploid) 412.150
CNS0095598Silvery flower (diploied) 156.333
CNS0095599Silvery flower (diploied) 236.497
CNS0095600Silvery flower (diploied) 338.508
CNS0095601Golden flower (diploid) 136.404
CNS0095602Golden flower (diploid) 258.395
CNS0095603Golden flower (diploid) 356.059
CNS0095604Slightly white alabastrum(tetraploid) 116.770
CNS0095605Slightly white alabastrum(tetraploid) 216.132
CNS0095606Slightly white alabastrum(tetraploid) 331.624
CNS0095607Whole white alabastrum(tetraploid) 114.458
CNS0095608Whole white alabastrum(tetraploid) 210.893
CNS0095609Whole white alabastrum(tetraploid) 321.032
CNS0095610Silvery flower (tetraploid) 130.506
CNS0095611Silvery flower (tetraploid) 233.085
CNS0095612Silvery flower (tetraploid) 310.964
CNS0095613Golden flower (tetraploid) 19.125
CNS0095614Golden flower (tetraploid) 221.040
CNS0095615Golden flower (tetraploid) 36.813
CRA001975CRR073297Stem 128.797
CRR073298Stem 225.134
CRR073299Stem 323.399
CRR073300Leaf 124.926
CRR073301Leaf 219.789
CRR073302Leaf 322.978
CRR073303Juvenile bud 125.418
CRR073304Juvenile bud 216.763
CRR073305Juvenile bud 333.055
CRR073306Third green 18.969
CRR073307Third green 27.072
CRR073308Third green 38.094
CRR073309Second white 15.344
CRR073310Second white 24.654
CRR073311Second white 35.021
CRR073312Silver flowering 14.892
CRR073313Silver flowering 24.077
CRR073314Silver flowering 33.960
CRR073315Gold flowering 114.932
CRR073316Gold flowering 222.836
CRR073317Gold flowering 313.486
CRR073318Tawny withering 127.360
CRR073319Tawny withering 222.935
CRR073320Tawny withering 321.057