Detail information of GWHGAAZE005378


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU41945.10hypothetical protein MIMGU_mgv1a012043mg [Erythranthe guttata]
Swissprottr|P46300|RS4_SOLTU040S ribosomal protein S4
trEMBLtr|A0A022RSS0|A0A022RSS0_ERYGU040S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}
TAIR10AT5G58420.13E-129Ribosomal protein S4 (RPS4A) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene69012486902569-
GWHAAZE00000002mRNA69012486902569-
GWHAAZE00000002exon69024926902569-
GWHAAZE00000002exon69022096902389-
GWHAAZE00000002exon69018006901897-
GWHAAZE00000002exon69012486901682-
GWHAAZE00000002CDS69024926902569-
GWHAAZE00000002CDS69022096902389-
GWHAAZE00000002CDS69018006901897-
GWHAAZE00000002CDS69012486901682-
Transcript Sequence

Network for GWHGAAZE005378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08071.13RS4NT2384.20E-19
PF01479.26S446893.50E-07
PF00900.21Ribosomal_S4e941683.60E-36
PF00467.30KOW1762105.80E-07
PF16121.640S_S4_C2112583.20E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02987RP-S4e, RPS4 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf245.057
SRR3591706second leaf158.489
SRR3591707mature leaf54.864
SRR3591708Shoot apex353.598
SRR3591709Stem119.804
SRR3591710White floral bud109.715
SRR3591711White flower123.473
SRR3591712Green floral bud229.592
SRR3591713Yellow flower74.808
SRP173429 SRR8316895Juvenile bud stage 159.195
SRR8316896Juvenile bud stage 186.119
SRR8316897Juvenile bud stage 112.190
SRR8316894Third green stage 81.542
SRR8316900Third green stage 266.947
SRR8316901Third green stage 243.284
SRR8316898Complete white stage 62.056
SRR8316899Complete white stage 224.585
SRR8316903Complete white stage 67.428
SRR8316902Silver flowering stage53.534
SRR8316904Silver flowering stage61.105
SRR8316905Silver flowering stage27.027
SRR8316906Gold flowering stage 98.080
SRR8316907Gold flowering stage 104.290
SRR8316908Gold flowering stage 113.599
SRP132670SRR6706286Control283.992
SRR6706287Light intensity 50%303.450
SRR6706288Light intensity 20%336.248
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1251.876
CNS0095593Slightly white alabastrum(diploid) 2281.907
CNS0095594Slightly white alabastrum(diploid) 3228.190
CNS0095595Whole white alabastrum(diploid) 2206.632
CNS0095596Whole white alabastrum(diploid) 3229.802
CNS0095597Whole white alabastrum(diploid) 4162.171
CNS0095598Silvery flower (diploied) 1123.746
CNS0095599Silvery flower (diploied) 2124.288
CNS0095600Silvery flower (diploied) 396.806
CNS0095601Golden flower (diploid) 1104.503
CNS0095602Golden flower (diploid) 289.567
CNS0095603Golden flower (diploid) 389.164
CNS0095604Slightly white alabastrum(tetraploid) 1224.836
CNS0095605Slightly white alabastrum(tetraploid) 2226.286
CNS0095606Slightly white alabastrum(tetraploid) 3312.761
CNS0095607Whole white alabastrum(tetraploid) 1110.953
CNS0095608Whole white alabastrum(tetraploid) 296.020
CNS0095609Whole white alabastrum(tetraploid) 3213.870
CNS0095610Silvery flower (tetraploid) 1102.921
CNS0095611Silvery flower (tetraploid) 286.668
CNS0095612Silvery flower (tetraploid) 367.559
CNS0095613Golden flower (tetraploid) 156.597
CNS0095614Golden flower (tetraploid) 275.675
CNS0095615Golden flower (tetraploid) 351.233
CRA001975CRR073297Stem 1250.501
CRR073298Stem 2249.791
CRR073299Stem 3273.744
CRR073300Leaf 1231.322
CRR073301Leaf 2248.325
CRR073302Leaf 3323.455
CRR073303Juvenile bud 1243.233
CRR073304Juvenile bud 2196.615
CRR073305Juvenile bud 3239.185
CRR073306Third green 149.963
CRR073307Third green 243.535
CRR073308Third green 348.437
CRR073309Second white 151.066
CRR073310Second white 232.139
CRR073311Second white 329.419
CRR073312Silver flowering 142.927
CRR073313Silver flowering 253.266
CRR073314Silver flowering 342.088
CRR073315Gold flowering 1107.569
CRR073316Gold flowering 2113.057
CRR073317Gold flowering 3104.387
CRR073318Tawny withering 1177.561
CRR073319Tawny withering 2132.946
CRR073320Tawny withering 3177.431