Gene detail

Detail information of GWHGAAZE005370

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653390.1	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Vitis vinifera]
Swissprot	tr\|Q7Y1C4\|BRC2B_ARATH	Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
trEMBL	tr\|A0A067JS55\|A0A067JS55_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP22830.1}
TAIR10	AT5G01630.1	BRCA2-like B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6802825	6810211	+
GWHAAZE00000002	mRNA	6802825	6810211	+
GWHAAZE00000002	exon	6802825	6802987	+
GWHAAZE00000002	exon	6803073	6803228	+
GWHAAZE00000002	exon	6803760	6804794	+
GWHAAZE00000002	exon	6804888	6805012	+
GWHAAZE00000002	exon	6805098	6805252	+
GWHAAZE00000002	exon	6806352	6806474	+
GWHAAZE00000002	exon	6806563	6806748	+
GWHAAZE00000002	exon	6806833	6806914	+
GWHAAZE00000002	exon	6807012	6807062	+
GWHAAZE00000002	exon	6807151	6807226	+
GWHAAZE00000002	exon	6807353	6807464	+
GWHAAZE00000002	exon	6807544	6807615	+
GWHAAZE00000002	exon	6807748	6807946	+
GWHAAZE00000002	exon	6808040	6808222	+
GWHAAZE00000002	exon	6808581	6808723	+
GWHAAZE00000002	exon	6809071	6809133	+
GWHAAZE00000002	exon	6809218	6809428	+
GWHAAZE00000002	exon	6809762	6809929	+
GWHAAZE00000002	exon	6810017	6810211	+
GWHAAZE00000002	CDS	6802825	6802987	+
GWHAAZE00000002	CDS	6803073	6803228	+
GWHAAZE00000002	CDS	6803760	6804794	+
GWHAAZE00000002	CDS	6804888	6805012	+
GWHAAZE00000002	CDS	6805098	6805252	+
GWHAAZE00000002	CDS	6806352	6806474	+
GWHAAZE00000002	CDS	6806563	6806748	+
GWHAAZE00000002	CDS	6806833	6806914	+
GWHAAZE00000002	CDS	6807012	6807062	+
GWHAAZE00000002	CDS	6807151	6807226	+
GWHAAZE00000002	CDS	6807353	6807464	+
GWHAAZE00000002	CDS	6807544	6807615	+
GWHAAZE00000002	CDS	6807748	6807946	+
GWHAAZE00000002	CDS	6808040	6808222	+
GWHAAZE00000002	CDS	6808581	6808723	+
GWHAAZE00000002	CDS	6809071	6809133	+
GWHAAZE00000002	CDS	6809218	6809428	+
GWHAAZE00000002	CDS	6809762	6809929	+
GWHAAZE00000002	CDS	6810017	6810067	+
GWHAAZE00000002	three_prime_UTR	6810068	6810211	+

Transcript Sequence
>GWHTAAZE005376 ATGTCTACTTGGCAGATATTTGCTGACACCGGGAACACTTTCCGGTGGGAGATATCCGACCAACATCTCCCAATTGATCCCGGCGAACAACTCCCCGGCGCTTCAATTCAACAATCTAGCTCTTCTCATCGTCTCCCCTCCATGGCCGATCTTTTTCTTCAAGGATGTTCAAAGCTGATGGAAAACGGCGGTGACCGTGTGGACAGTCCACCAATGTTCAAAACTGGATTGGGGAAATCAGTTATGCTGAACAAGTCTTCTATGTCAAAGGCGCTCTCTATTCTTGGTGATGAAGGTGATGTCGTTGCTGCTTCAGGAGGCCAATTTTGTGGAAGAGGAAACCAAGGCAGTCTATCAAATTCAATGTTCCAGACAGGCTCAGGGAAAGCAGTTAACATATCCTCCACAGGTCTTGTCAGAGCCAAGACATTGTTGGGTTTGGAAGAAAATCACAATCATGAGACATTTCATGGATTTGAACATACAAGGAAGCAGTCAAATGACAGTGAATCCTTTTATTTCAAAAGTTCATCTCATGTAGAGACGCCAGAGGTTGTGACTAAAAACACAGGCTTAAAGGATGCTATATCAGCTCCAATATCTCCATTCGATTTTCAGTCAGCTTCATTAGGAAGCGAATTGAAAGAGGCCACTCCAAAATACACGCATTCTGCTCCAAGGCCACCTCCAATCAAGTTTCATACTGCCGGCGGAAGATCAATATCAGTTTCTAGTGATGCCTTACAACGTGCAAGGAGCCTTCTAGGAGATCCAGAATTGGGAACTTTCTTAGATGAAAGTGATGCAGGCGATACAGCCTTTTCAGTTTGTAAAGGCACAAAGTCAACTGATAATTCTTCGAACAAAGAAAATGAGCCAAGCACTTCTTTGCCATGTCAAGAGACAATAAAGATCAAACACTCGTCAAAAGTTTTTATATCCCCAATCCGATCATCCTCCAATCAGAAGCACTCTTCAATTAGGTCAAATAATATACGTTCAGGGAGTAATTTGATCAAAAAATTTGATGCAGAGAGTGATGACAGCACTAACAGACAGTATGATGATATACCACGCCCGGGAAAGCTTTTAGCACATAGATTGCAATCACTTAATGGAGTACGAGGCGATTCTGTGGCTAATGGCATTGGTTCCAGAGTCAACTTACATGGAAGGTCGTCAGCTTTGCCACTCGTAGATATTTCAAATACTGTTGGCATGGATGATGCAGATAAAAAGCAAGCATTTGCTGAAAAGAGGAGATTTGGAAGAAGTTCTATTTCTCCTTTCAAAAGGCCCCGCATTTCCAAATTTATCACCCCTCTGAACAACAATACCTCATTGGTTGGTAATGGTGTATCACCCTTAGCTCCTGAAGAATCCCCTTCTAAAAGAAGGGTTTCCACTCGATACCCATTTCAGTCTTCACGAACATATATTAAAGAATATTTTGAAGTGCCTCCGCGCCATCAAAACATGCTGGAGCACTTGCCGGATTGGGTAAGAAGGATGAATCCAGGGAATGCAGAAAAACACACGTTCCATGATGGATCAGGTTTAGATTCCATTGGCGCGGAAGCTTTTTCCCACAAGTTGTCTCAGTCTGGAGCTTCCATACAATATGTTTCTCCAAAGTGGGTTGTGAATCACTGCAAGTGGGTTGTTTGGAAACTTGCTTGTTATGAGAGATGCTATCCTGCTAAATTTTCTGGAAAACTATTAACAGCGTCTAATGCATTTGAGGAGTTGAAATATAGATACGAGCGAGAGGTAAATCATGGTAATCGATCTGCAATTAGGAGAATTCTAGAAGGTGATGCAGCACCTTCTTCAATGTTGGTACTCTGCATTTCATCTGTCTACTCAAAGTGTGATCCAGAGATTGAAACTCTTGCCACATCAGATGGTAGTACAGCGGCAGCAATAGAATTAACTGATGGGTGGTATTCAGTCAATGCTCTGCTGGATGTAATGCTGTCAAAGAAGCTTGCTGCGGGAAAATTATTTGTGGGACAAAAACTTAGGATATCTGGAGCTGGATTATGTGGCTGGGTTGGGCCTGTTTCACCCCTAGAGGCATCAAGGACCATTAGCTTAAGCTTGCACATTAATGGGACGTATAGAGCTCACTGGGGTGATCGTTTGGGATTCTGTAAGGAAAGCGGCGTTCCATTGGCATTTAGGTGCATCAAGGCTTTTGGAGGAGCTGTTCCTAGCACATTAGTTGGAGTCACAAGGATATACCCTGTTCTGTACAGGGAAAGGTTACGTGATGGGGGATTTGTCATTAGATCAGAGAGACTGGAAAATAAAATGATGCAATTGCATAATCAAAGGCGCTCGACGGTTGCAGAAGGCATTATGTCTGAGTTTCAAATGGGAAACAAAGAATCAGATATTAAGAATGATTATGATAGTGACGAAGGGGCCAAAATTTTGAAAATACTCGAAACAGCTGCTGAACCTGAAGTTTTAATGGCCGAGATGAGTTCAGAACAACTGAATTCTTTTGCTACTTATCGAGCAAAACTAGAGGCAATGCGGCAAACAGATGTGCATAAATCAATTGAGAAAGCTTTTGTAGATGCTGGCCTAAGTGAAAGAGAGGTCACCCCATTTATGAGGGTAAGAGTGGTTGGGCTAACTACTAAAAGTGATCTAAGAAAGCGCTGCCCAAGGAATGGCTTGATAACCATCTGGAATCCCACTGAGAAGCAGCAAGAAGGGCTGGTTGAAGGGCAGGCATATGTTATTGCAGGACTTATACCACTAAGCTGTGATTCAGATACCCTTTTTCTGCAAGCAAGTGGAGGAACTACAAAGTGGATGCCTTTATCTTCCTCAACAATTGAGCAATTTCAGTCATTCTTCAATCCTCGCACACCAGTCCCATTGTCAAAGATGGGTGAAGTTTCTCTCTCTAGTGAGTTTGATATTGCTGCATTCGTCATATATGTGGGAGAGGTGTACACAGCTTCTCATCAGAAGAAGCAGTGGGTTTTTGTGACAGATGGCTCGATATCTGCGCTGAATTCAGAAGAACCATCTAATACTTTGCTTGCCATTAGCTTCTGCGCACCATACATTGATGGCGATTCATTTGTACCAATCAACTATAACCTTCAAGGATCAACAGTTGGATTTTGTAATCTTATCAAGAAAGCAAAGGACCAAATGAATCATCTCTGGGTGGCAGAAGCAACAGAAAATTCTGCTTATTTTCTAAGTTATGACCATGCACATTGCACTCACTTGAAAGATGCTGCTGCTTCTGCTCAAAGATGGGCGAAGAACTCTAGCTTGACAATTGAGAAGCTTAGGGGAAAGGTTTTATCTATTATTGGCAAATGTTGAAGGAGGTTATCCGTGCAAATTGACATGCAAGTCTTTGTACTTGGTGATTTTTTTCCACATGTTTGACATTATTTAGGAGGTATCTATCCTTTCTTCTCAGCAAGGTATCACTCTGTGGTCCATGTTATTCAGACTTCCATTAAT

Network for GWHGAAZE005370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00634.19	BRCA2	119	147	1.50E-05
PF00634.19	BRCA2	231	259	1.90E-07
PF09169.11	BRCA-2_helical	524	593	5.70E-15
PF09103.11	BRCA-2_OB1	597	719	3.20E-35

Protein Sequence

>GWHPAAZE005373
MSTWQIFADTGNTFRWEISDQHLPIDPGEQLPGASIQQSSSSHRLPSMADLFLQGCSKLMENGGDRVDSPPMFKTGLGKSVMLNKSSMSKALSILGDEGDVVAASGGQFCGRGNQGSLSNSMFQTGSGKAVNISSTGLVRAKTLLGLEENHNHETFHGFEHTRKQSNDSESFYFKSSSHVETPEVVTKNTGLKDAISAPISPFDFQSASLGSELKEATPKYTHSAPRPPPIKFHTAGGRSISVSSDALQRARSLLGDPELGTFLDESDAGDTAFSVCKGTKSTDNSSNKENEPSTSLPCQETIKIKHSSKVFISPIRSSSNQKHSSIRSNNIRSGSNLIKKFDAESDDSTNRQYDDIPRPGKLLAHRLQSLNGVRGDSVANGIGSRVNLHGRSSALPLVDISNTVGMDDADKKQAFAEKRRFGRSSISPFKRPRISKFITPLNNNTSLVGNGVSPLAPEESPSKRRVSTRYPFQSSRTYIKEYFEVPPRHQNMLEHLPDWVRRMNPGNAEKHTFHDGSGLDSIGAEAFSHKLSQSGASIQYVSPKWVVNHCKWVVWKLACYERCYPAKFSGKLLTASNAFEELKYRYEREVNHGNRSAIRRILEGDAAPSSMLVLCISSVYSKCDPEIETLATSDGSTAAAIELTDGWYSVNALLDVMLSKKLAAGKLFVGQKLRISGAGLCGWVGPVSPLEASRTISLSLHINGTYRAHWGDRLGFCKESGVPLAFRCIKAFGGAVPSTLVGVTRIYPVLYRERLRDGGFVIRSERLENKMMQLHNQRRSTVAEGIMSEFQMGNKESDIKNDYDSDEGAKILKILETAAEPEVLMAEMSSEQLNSFATYRAKLEAMRQTDVHKSIEKAFVDAGLSEREVTPFMRVRVVGLTTKSDLRKRCPRNGLITIWNPTEKQQEGLVEGQAYVIAGLIPLSCDSDTLFLQASGGTTKWMPLSSSTIEQFQSFFNPRTPVPLSKMGEVSLSSEFDIAAFVIYVGEVYTASHQKKQWVFVTDGSISALNSEEPSNTLLAISFCAPYIDGDSFVPINYNLQGSTVGFCNLIKKAKDQMNHLWVAEATENSAYFLSYDHAHCTHLKDAAASAQRWAKNSSLTIEKLRGKVLSIIGKC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08775	BRCA2, FANCD1	Homologous recombination	map03440
K08775	BRCA2, FANCD1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0000724	biological_process	double-strand break repair via homologous recombination

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.808
	SRR3591706	second leaf	1.914
	SRR3591707	mature leaf	1.552
	SRR3591708	Shoot apex	13.257
	SRR3591709	Stem	2.551
	SRR3591710	White floral bud	0.675
	SRR3591711	White flower	0.711
	SRR3591712	Green floral bud	0.893
	SRR3591713	Yellow flower	0.351
SRP173429	SRR8316895	Juvenile bud stage	2.487
	SRR8316896	Juvenile bud stage	3.329
	SRR8316897	Juvenile bud stage	1.567
	SRR8316894	Third green stage	1.154
	SRR8316900	Third green stage	3.715
	SRR8316901	Third green stage	2.461
	SRR8316898	Complete white stage	0.863
	SRR8316899	Complete white stage	2.622
	SRR8316903	Complete white stage	1.515
	SRR8316902	Silver flowering stage	0.873
	SRR8316904	Silver flowering stage	1.298
	SRR8316905	Silver flowering stage	0.550
	SRR8316906	Gold flowering stage	1.177
	SRR8316907	Gold flowering stage	1.367
	SRR8316908	Gold flowering stage	1.265
SRP132670	SRR6706286	Control	2.422
	SRR6706287	Light intensity 50%	2.789
	SRR6706288	Light intensity 20%	3.153
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.446
	CNS0095593	Slightly white alabastrum(diploid) 2	2.068
	CNS0095594	Slightly white alabastrum(diploid) 3	1.413
	CNS0095595	Whole white alabastrum(diploid) 2	1.726
	CNS0095596	Whole white alabastrum(diploid) 3	1.994
	CNS0095597	Whole white alabastrum(diploid) 4	1.448
	CNS0095598	Silvery flower (diploied) 1	2.301
	CNS0095599	Silvery flower (diploied) 2	2.798
	CNS0095600	Silvery flower (diploied) 3	2.553
	CNS0095601	Golden flower (diploid) 1	1.927
	CNS0095602	Golden flower (diploid) 2	1.744
	CNS0095603	Golden flower (diploid) 3	1.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.457
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.093
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.858
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.849
	CNS0095610	Silvery flower (tetraploid) 1	1.556
	CNS0095611	Silvery flower (tetraploid) 2	1.804
	CNS0095612	Silvery flower (tetraploid) 3	2.420
	CNS0095613	Golden flower (tetraploid) 1	0.795
	CNS0095614	Golden flower (tetraploid) 2	1.161
	CNS0095615	Golden flower (tetraploid) 3	1.154
CRA001975	CRR073297	Stem 1	3.108
	CRR073298	Stem 2	2.535
	CRR073299	Stem 3	1.776
	CRR073300	Leaf 1	2.485
	CRR073301	Leaf 2	1.848
	CRR073302	Leaf 3	1.167
	CRR073303	Juvenile bud 1	1.444
	CRR073304	Juvenile bud 2	1.089
	CRR073305	Juvenile bud 3	2.112
	CRR073306	Third green 1	0.548
	CRR073307	Third green 2	0.427
	CRR073308	Third green 3	0.446
	CRR073309	Second white 1	0.379
	CRR073310	Second white 2	0.795
	CRR073311	Second white 3	0.509
	CRR073312	Silver flowering 1	0.446
	CRR073313	Silver flowering 2	1.026
	CRR073314	Silver flowering 3	0.631
	CRR073315	Gold flowering 1	0.997
	CRR073316	Gold flowering 2	1.548
	CRR073317	Gold flowering 3	0.778
	CRR073318	Tawny withering 1	1.828
	CRR073319	Tawny withering 2	1.595
	CRR073320	Tawny withering 3	1.337