Gene detail

Detail information of GWHGAAZE005337

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004246316.1	PREDICTED: regulatory-associated protein of TOR 1-like [Solanum lycopersicum]
Swissprot	tr\|Q93YQ1\|RTOR1_ARATH	Regulatory-associated protein of TOR 1
trEMBL	tr\|K4CRV4\|K4CRV4_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g014780.2.1}
TAIR10	AT3G08850.1	HEAT repeat ;WD domain, G-beta repeat protein protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6369216	6381865	+
GWHAAZE00000002	mRNA	6369216	6381865	+
GWHAAZE00000002	exon	6369216	6369218	+
GWHAAZE00000002	exon	6369287	6369388	+
GWHAAZE00000002	exon	6370061	6370144	+
GWHAAZE00000002	exon	6370228	6370338	+
GWHAAZE00000002	exon	6370931	6371284	+
GWHAAZE00000002	exon	6371383	6371569	+
GWHAAZE00000002	exon	6372638	6373093	+
GWHAAZE00000002	exon	6373231	6373560	+
GWHAAZE00000002	exon	6373658	6373781	+
GWHAAZE00000002	exon	6380031	6380155	+
GWHAAZE00000002	exon	6380258	6380403	+
GWHAAZE00000002	exon	6380635	6380736	+
GWHAAZE00000002	exon	6381175	6381260	+
GWHAAZE00000002	exon	6381374	6381458	+
GWHAAZE00000002	exon	6381575	6381865	+
GWHAAZE00000002	CDS	6369216	6369218	+
GWHAAZE00000002	CDS	6369287	6369388	+
GWHAAZE00000002	CDS	6370061	6370144	+
GWHAAZE00000002	CDS	6370228	6370338	+
GWHAAZE00000002	CDS	6370931	6371284	+
GWHAAZE00000002	CDS	6371383	6371569	+
GWHAAZE00000002	CDS	6372638	6373093	+
GWHAAZE00000002	CDS	6373231	6373560	+
GWHAAZE00000002	CDS	6373658	6373781	+
GWHAAZE00000002	CDS	6380031	6380155	+
GWHAAZE00000002	CDS	6380258	6380403	+
GWHAAZE00000002	CDS	6380635	6380736	+
GWHAAZE00000002	CDS	6381175	6381260	+
GWHAAZE00000002	CDS	6381374	6381458	+
GWHAAZE00000002	CDS	6381575	6381865	+

Transcript Sequence
>GWHTAAZE005343 ATGCCGAGCCCTTTTTTCACAGAACAGTTGACGGGTTTTGAAGTTTGGCTTGATCATGGATCTGAGAATAAGAAACCACCTGAGCAGCTACCTATTGTTCTTCAGGTTTTACTTAGTCAATCTCATCGATTTCATGCTCTGGTGCTTCTCGGAAGGTTTCTCGATATGGGCCCCTGGGCTGTAGATCTGGCCCTATCTGTAGGAATATTTCCATATATGTTGAAGTTGTTGCCAGCAACTAATCCAGAAATTCGACAAATTCTTGTTTTTATATGGACAAAGATCCTTGCACTTGATAAGTCATGCCAAGTTGATCTTGTAAAGGACAGTGGACACATACATTTCATCAGGTTTCTTGATAGTGGGGAAGCCTATCCAGAGCAGCGTGCAATGGCTGCATTTGTTTTGGCAGTCATTGTAGATGGACACAGACGGGGACAAGTAGCTTGTGTGGAAGCCGGTGCTATACATGTGTGCTTGAAACACCTTCAGGGATCAACTCTAAATGAGGCTCAAACTGAGCCTCTATTTCTTCAGTGGCTTTCCCTTTGTCTTGGAAAATTGTGGGAAGATTTCACTGAGGCTCAAATAATAGGTTTGGAGGCAGATGCACTTGCTATATATGGATATCTACTATCCGAGCCCCAACCTGAGGTGCGTGCTTCAGCTATTTTTGCACTAGGCACTCTACTCGATGTTGGATTTGACTCATCTAGAGATGGTGTTGGATATGAAGAAAGTGACGATGATGAAAAAGTTAGGAATGAAATTAGTATTGTTAAGAGCCTCTTAAGTGTTGTTTCAGACGGAAGTCCATTAGTCAGGGCAGAGCTTGCTGTAGCTTTGGCACGCTTTGCCTTTGGCCACAACAAGCACTTGAAATCAATTGCAGCTGCATATTGGAAACCTCAGTCTAACCCCGTGCTGAGTTCGCTGCCTTCTTTCGCCATCAAGGGTGCCACCGGTAGTAGCTATACTAAAAACCAATCATCGGTCCACGATGGGAGGGTCTCCACCAGCGGTCCACTTGCTAATTCTGGAATATTGCTTGGATCTCCACCATCTGATAATTCATCTCACCATTCTGATTCTGTGATCCGGACTGACTGCATTAGCAATGGTGATGCTAACCATACAAGGGTACGGCCACTAGACAATTCATTGTACTCACAATGCGTATCGGCAATGCGTATACTAGCCAAGGATCCATCACCACGTGTTGCAGGCCTTGGTCGGCGTGTACTATCGATTATTGGGATTAAACAAACCTTGACAAAATCAATGAAGTCCAGTGCAGCTCAGATACCCCCGGTGTTCAGAACTCCACCAGTTAGTCCTCCTCGATCAAGTCCCTTGACCAGAATACGAAGGGTTTGTTCTTTAGATTTAAGCCCACACCTCATGACTTATAAGGACTCGGGGTTCGCTGATCCGATTCAAGGTTCAAGTGGAGCTTCTGAAGTTTCAGAGAATAGTTTTCCTCCACAATCTATAGTCTATAATTGGAGTTGTGCTCACTTCTCAAAACCACTTCTTACTGCACCAGATGATAATGAAGAGATGATGACTACAAGAGAAAAAAGGGAAAAAAATTCCCTTGACTGCATAGCTAGGTGCCAACACTCCTCTGTTAGTAAGCTACAGAGTCAAATCTCTAGTTGGGATACAAAATTTGAGACCGGTACCAAAACAGCTTTGCTGCAACCTTTCTATCCTGTTGTGATTGCTGCTGATGAGGGTGAGCGGATCAGGGTGTGGAATTATGAAGAAGGTACCCTGCTTAACAATTTTGACAATCATGACTATCCAGACAAAGGGATATCAAAACTCTGCCTGGTGAATGAGCTTGATGATGACTTTCTTCTTGTTGCTTCGAGTGATGGAAATGTCCGGATATGGAAAGATTTCTCATTAAAGGGTAAACAGAAACTTGTGACTGCCTTCTCTTCTGTCCAAGGTCATAGGCCCGGAGTGCGTAGTCTGAATGCTGTTGTCGATTGGCAGCAGACGTCTGGTTATATGTATGCCTCTGGTGAGATATCGACGATTATGGTTTGGGATCTGGATAAGGAGCAGCTTGTTGGTTCTATTCCTTTAGCTTCAGACTGTAGCATCTCAGCATTGTCTGCTTCGCAAATTCATGGGGGTCAATTTGCTGCTGGTTTTGTGGATGGTTCTGTTAGACTATTTGACATTCGAACGCCTGAATCGCATGTTTGTACAACCCAACCACATGCTCGGAGAGTAGAAAGAGTTGTGGAAATTGGCTTTCAGCCTGGACTTGATCCAACCAAGATTATCAGTGCATATGAAGTCGGTGGAATTCAGTTATTTGATGTGAGACGTCAGAAGGATGCCTACCTAACCTTTAACGAGAAAAGGGGTCCAATTACAGCTTTAGCTGTACATCGGCACGCACCGCTAATTGCCAGTGGATCAGCCAAAAAGCTAATTGATGTGTTCAACCTGGAGGGTGGACGATTAGGCACCATCCGGTCCCCCCATGTAAACTCCCTTGCTTTCCATCCCTATCAAGTACTTCTTGCCGCTGGTGCTACAGACGCCTGCCATTTCTACTTGTGCTGA

Network for GWHGAAZE005337

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	597	634	0.11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07204	RAPTOR	PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Insulin signaling pathway	map04910
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.649
	SRR3591706	second leaf	15.213
	SRR3591707	mature leaf	16.530
	SRR3591708	Shoot apex	24.930
	SRR3591709	Stem	30.695
	SRR3591710	White floral bud	26.556
	SRR3591711	White flower	26.736
	SRR3591712	Green floral bud	23.898
	SRR3591713	Yellow flower	24.335
SRP173429	SRR8316895	Juvenile bud stage	10.654
	SRR8316896	Juvenile bud stage	13.851
	SRR8316897	Juvenile bud stage	7.055
	SRR8316894	Third green stage	8.009
	SRR8316900	Third green stage	17.993
	SRR8316901	Third green stage	15.894
	SRR8316898	Complete white stage	8.201
	SRR8316899	Complete white stage	25.352
	SRR8316903	Complete white stage	16.887
	SRR8316902	Silver flowering stage	10.795
	SRR8316904	Silver flowering stage	17.240
	SRR8316905	Silver flowering stage	7.939
	SRR8316906	Gold flowering stage	22.985
	SRR8316907	Gold flowering stage	22.862
	SRR8316908	Gold flowering stage	26.005
SRP132670	SRR6706286	Control	18.875
	SRR6706287	Light intensity 50%	20.221
	SRR6706288	Light intensity 20%	21.223
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.565
	CNS0095593	Slightly white alabastrum(diploid) 2	13.333
	CNS0095594	Slightly white alabastrum(diploid) 3	11.642
	CNS0095595	Whole white alabastrum(diploid) 2	10.935
	CNS0095596	Whole white alabastrum(diploid) 3	9.841
	CNS0095597	Whole white alabastrum(diploid) 4	10.296
	CNS0095598	Silvery flower (diploied) 1	15.692
	CNS0095599	Silvery flower (diploied) 2	14.609
	CNS0095600	Silvery flower (diploied) 3	19.658
	CNS0095601	Golden flower (diploid) 1	14.805
	CNS0095602	Golden flower (diploid) 2	20.776
	CNS0095603	Golden flower (diploid) 3	18.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.175
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.920
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.351
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.186
	CNS0095610	Silvery flower (tetraploid) 1	23.403
	CNS0095611	Silvery flower (tetraploid) 2	22.031
	CNS0095612	Silvery flower (tetraploid) 3	22.379
	CNS0095613	Golden flower (tetraploid) 1	15.256
	CNS0095614	Golden flower (tetraploid) 2	20.287
	CNS0095615	Golden flower (tetraploid) 3	27.633
CRA001975	CRR073297	Stem 1	23.804
	CRR073298	Stem 2	20.362
	CRR073299	Stem 3	13.869
	CRR073300	Leaf 1	26.076
	CRR073301	Leaf 2	24.355
	CRR073302	Leaf 3	12.941
	CRR073303	Juvenile bud 1	16.709
	CRR073304	Juvenile bud 2	9.845
	CRR073305	Juvenile bud 3	20.978
	CRR073306	Third green 1	8.027
	CRR073307	Third green 2	5.985
	CRR073308	Third green 3	9.425
	CRR073309	Second white 1	7.380
	CRR073310	Second white 2	7.425
	CRR073311	Second white 3	10.053
	CRR073312	Silver flowering 1	7.052
	CRR073313	Silver flowering 2	6.419
	CRR073314	Silver flowering 3	6.631
	CRR073315	Gold flowering 1	9.452
	CRR073316	Gold flowering 2	16.926
	CRR073317	Gold flowering 3	8.198
	CRR073318	Tawny withering 1	20.426
	CRR073319	Tawny withering 2	17.710
	CRR073320	Tawny withering 3	20.105