Gene detail

Detail information of GWHGAAZE005336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632587.1	0	PREDICTED: regulatory-associated protein of TOR 1 [Vitis vinifera]
Swissprot	tr\|Q93YQ1\|RTOR1_ARATH	0	Regulatory-associated protein of TOR 1
trEMBL	tr\|D7SR28\|D7SR28_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18073.3}
TAIR10	AT3G08850.1	1E-164	HEAT repeat ;WD domain, G-beta repeat protein protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6362506	6369187	+
GWHAAZE00000002	mRNA	6362506	6369187	+
GWHAAZE00000002	exon	6362506	6362805	+
GWHAAZE00000002	exon	6362955	6363051	+
GWHAAZE00000002	exon	6367608	6367690	+
GWHAAZE00000002	exon	6367778	6367936	+
GWHAAZE00000002	exon	6368049	6368165	+
GWHAAZE00000002	exon	6368280	6368428	+
GWHAAZE00000002	exon	6368573	6368727	+
GWHAAZE00000002	exon	6368841	6368985	+
GWHAAZE00000002	exon	6369061	6369187	+
GWHAAZE00000002	CDS	6362506	6362805	+
GWHAAZE00000002	CDS	6362955	6363051	+
GWHAAZE00000002	CDS	6367608	6367690	+
GWHAAZE00000002	CDS	6367778	6367936	+
GWHAAZE00000002	CDS	6368049	6368165	+
GWHAAZE00000002	CDS	6368280	6368428	+
GWHAAZE00000002	CDS	6368573	6368727	+
GWHAAZE00000002	CDS	6368841	6368985	+
GWHAAZE00000002	CDS	6369061	6369187	+

Transcript Sequence
>GWHTAAZE005342 ATGGCATTGGGGGATTTGATGGCCTCTCGATACTCTCAGTCGTCGGCGGTGGTCTCCAATCACTCGAACGACTGTCCGAACTACGAATCTTTAGAATCGATTTGGCAGAGAAGGGACTGGGATTCCGAGAGAGCAAGTAGTACTAGTTATGGCAATGCCACTAGTGTGACGGTAACAAGCATGGCGTATTTGCCACAAACTACTGTATTGTGTGAGTTTCGGCACGAGGCTTTCGAGGTTAGTGGTCCCTACGCCCCACCAGTCAGGGATTTGGTTTCAAAATGGAGGCCCAAGGACCGACAATTCTCGAGTATTGGAACAGGATACAACCCCACCCCTCTGTGCCCTAGCCCATGCAGGAAGGAATTGTTTGTGATACACAATGGAATATTGTGTGATCCATTCTCTATGGCACCTCGAAAAGCACTTGAAACAATTGGGGGAACCCTGAGTTTACAGTATGAAAGGTGGCAACCAAAGGCTAAATGCAAGGCTGAATTAGACCCTACTGTAGACGAAATTAAGAAACTCTGTACTACATGGCGCAAGTTTGCAAAATCTGAGAGAGTTCTGTTTCACTACAACGGGCATGGTGTGCTAAAGCCAACTGGCAGTGGTCAAATTTGGCTATTGAATAAGAGTTATACAAAGTATATCCCTTTGCATATAAGTGACCTCGATTCCTGGTTGAAAACACCTTCGATATATGTTTTTGACTGCTCTGCTGCAGGGATGATTGTCAAAGCCTTTATAGAGCTTGAGGATAGTACTGGTAGCTCTTCTTCAAGGGATTGCATCTTGCTGGCAGCCTGTGAAGCGCACGAGACTCTTCCCCAGAGTGAAGAATTTCCTGCTGATGTATTTACCTCTTGCCTCACCACACCGATCAAGATGGCATTGAGATGGTCCCGCAGTCGTTCATTACTTAATGGGTCTCTTGACGATTCACTGATAGATAAAATACCTGGCCGCCAAAATGACAGGAAAACACTTCTTGGTGAACTCAACTGGATTTTTACGGCAGTGACTGACACAATTGCCTGGAATGTTCTCCCACACGATCTATTCCAGAGGTTGTTCAGACAAGATCTGTTGGTTGCTAGCCTGTTCCGAAATTTTTTACTTGCAGAGAGAATCTTGCGTTCTGCAAATTGTTCTCCAATTTCTTATCCAACACTGCCTTCCACTCATCAGCATCATATGTGGGATGCATGGGACATGGCTGCTGAAATATGCCTTTCCCAACTTCCAATGTTGCTTAAGGATCCAAATGCTGAGTTTCAGGCGAGAGCTATTAAATTTTCCTGGAATGAATTTCTCTTTACAAAATGA

Network for GWHGAAZE005336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14538.7	Raptor_N	133	250	3.40E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07204	RAPTOR	PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Insulin signaling pathway	map04910
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.831
	SRR3591706	second leaf	10.926
	SRR3591707	mature leaf	12.722
	SRR3591708	Shoot apex	13.500
	SRR3591709	Stem	19.563
	SRR3591710	White floral bud	17.420
	SRR3591711	White flower	22.280
	SRR3591712	Green floral bud	12.484
	SRR3591713	Yellow flower	16.388
SRP173429	SRR8316895	Juvenile bud stage	6.942
	SRR8316896	Juvenile bud stage	8.209
	SRR8316897	Juvenile bud stage	3.250
	SRR8316894	Third green stage	4.590
	SRR8316900	Third green stage	9.443
	SRR8316901	Third green stage	8.885
	SRR8316898	Complete white stage	3.847
	SRR8316899	Complete white stage	18.296
	SRR8316903	Complete white stage	14.853
	SRR8316902	Silver flowering stage	7.764
	SRR8316904	Silver flowering stage	12.046
	SRR8316905	Silver flowering stage	5.578
	SRR8316906	Gold flowering stage	17.948
	SRR8316907	Gold flowering stage	16.626
	SRR8316908	Gold flowering stage	19.366
SRP132670	SRR6706286	Control	14.081
	SRR6706287	Light intensity 50%	14.724
	SRR6706288	Light intensity 20%	15.562
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.346
	CNS0095593	Slightly white alabastrum(diploid) 2	1.863
	CNS0095594	Slightly white alabastrum(diploid) 3	3.474
	CNS0095595	Whole white alabastrum(diploid) 2	3.491
	CNS0095596	Whole white alabastrum(diploid) 3	2.404
	CNS0095597	Whole white alabastrum(diploid) 4	2.703
	CNS0095598	Silvery flower (diploied) 1	6.258
	CNS0095599	Silvery flower (diploied) 2	5.607
	CNS0095600	Silvery flower (diploied) 3	17.112
	CNS0095601	Golden flower (diploid) 1	4.162
	CNS0095602	Golden flower (diploid) 2	17.195
	CNS0095603	Golden flower (diploid) 3	15.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.943
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.258
	CNS0095610	Silvery flower (tetraploid) 1	16.423
	CNS0095611	Silvery flower (tetraploid) 2	17.990
	CNS0095612	Silvery flower (tetraploid) 3	15.288
	CNS0095613	Golden flower (tetraploid) 1	6.416
	CNS0095614	Golden flower (tetraploid) 2	13.160
	CNS0095615	Golden flower (tetraploid) 3	22.998
CRA001975	CRR073297	Stem 1	13.678
	CRR073298	Stem 2	10.799
	CRR073299	Stem 3	8.921
	CRR073300	Leaf 1	16.461
	CRR073301	Leaf 2	10.897
	CRR073302	Leaf 3	8.161
	CRR073303	Juvenile bud 1	6.731
	CRR073304	Juvenile bud 2	4.905
	CRR073305	Juvenile bud 3	12.049
	CRR073306	Third green 1	5.885
	CRR073307	Third green 2	3.518
	CRR073308	Third green 3	7.651
	CRR073309	Second white 1	3.559
	CRR073310	Second white 2	4.521
	CRR073311	Second white 3	8.079
	CRR073312	Silver flowering 1	5.907
	CRR073313	Silver flowering 2	4.861
	CRR073314	Silver flowering 3	3.031
	CRR073315	Gold flowering 1	3.457
	CRR073316	Gold flowering 2	9.079
	CRR073317	Gold flowering 3	5.009
	CRR073318	Tawny withering 1	8.039
	CRR073319	Tawny withering 2	5.858
	CRR073320	Tawny withering 3	7.894