Gene detail

Detail information of GWHGAAZE005321

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007205214.1	0	hypothetical protein PRUPE_ppa005902mg [Prunus persica]
Swissprot	tr\|Q9LZW4\|CIPKE_ARATH	2E-166	CBL-interacting serine/threonine-protein kinase 14
trEMBL	tr\|F6GXY0\|F6GXY0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44781.1}
TAIR10	AT5G01820.1	3E-127	serine/threonine protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6175129	6176417	+
GWHAAZE00000002	mRNA	6175129	6176417	+
GWHAAZE00000002	exon	6175129	6176028	+
GWHAAZE00000002	exon	6176100	6176417	+
GWHAAZE00000002	CDS	6175129	6176028	+
GWHAAZE00000002	CDS	6176100	6176417	+

Transcript Sequence
>GWHTAAZE005327 ATGACAGAGATGATAGATAACGCCGGGAATATGATGCCGCCGGAGGAGATCAACCTGTTCGGAAAATACGAGCTAGGGAAGCTTCTAGGCTATGGAGCCTTCGCAAAGGTGTACCATGCAAGGAACATACGCACAGGTCAGAGCGTTGCAATAAAAGCTGTGTGCAAGCAAAAAGCACTCAAAGAAGGCCTCACTGCGCAGCTTAAGCGTGAGATCTCTATCATGCGCCGCCTGCACCATTCTCACATCGTCCGCCTCTTCGAAGTCCTCGCAACCAAAACGAAGGTCTACTTCGTTCTAGAATTCGCCAAAGGCGGTGAGCTCTTCACCAAGGTCTCTAAAGGACGATTCAGTGAAGATCTCAGCCGTCGATACTTTCAGCAACTAATCTCCGCCATCGGATTCTGCCACTCCCGTGGCGTATTCCACCGTGATTTGAAACCGGAGAACCTCCTTCTAGACGAAAACTGGGACCTCAAAGTCACCGATTTCGGTCTCAGCGCCGTAGCCGACCAGATCCACCCGGACGGCCTGTTGCACACTCTGTGCGGCACGCCGGCGTACGTGGCGCCGGAGATTCTGGCGAAGAAAGGTTACGATGGAGCGAAGGTGGACATCTGGTCATGCGGAATCATACTATACGTTTTAAACGCCGGTTATTTGCCGTTCAATGATCCGAATCTGATGGTGATGTACCGGAAAATCTATAAAGGCCAGTTCCGGTGCCCTAAATGGACGTCACCTGATCTAAAACGCTTTCTATCTCGCCTCCTTGATACTAATCCCGAGACTAGGATCACCGTCGATGAGATAATCAACGATTCCTGGTTTCGAGAAGGTTACTCACAAACTAAACTGAGTGAAGGAAATTTTGAGCTCAAAGACCGTGAAGATGGTGATTCGGATTGTTCGGTTCATGGTGAACGGTTTTTATCGGCGGAGTTACCGGAGAGAATAATTGGGAAAATCGCGGAGGTTGCCAAGAAGGAAAACGTGACGGTGGTTAGATTGAAAGATTGGGGAGTGTTGCTTGAGGGGCATAATGGTAATTTGGTTGCCGTTGTAGAGATCAACCGGTTAACGGAAATGTTGGTTGTGGTGGAAATTACGAGGAGGGAGAGTGAAGCTTGGGCCAGCCTAGAAATCTGGGAAAATAGATTGAGGCCCCAGTTAAGTGGATTGATATATCAACCGGAGATACGGGTGTCCAGTAACTAA

Network for GWHGAAZE005321

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	277	1.60E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.151
	SRR3591706	second leaf	6.786
	SRR3591707	mature leaf	14.810
	SRR3591708	Shoot apex	13.064
	SRR3591709	Stem	22.021
	SRR3591710	White floral bud	42.529
	SRR3591711	White flower	60.434
	SRR3591712	Green floral bud	9.893
	SRR3591713	Yellow flower	61.804
SRP173429	SRR8316895	Juvenile bud stage	12.353
	SRR8316896	Juvenile bud stage	12.153
	SRR8316897	Juvenile bud stage	5.599
	SRR8316894	Third green stage	6.119
	SRR8316900	Third green stage	13.698
	SRR8316901	Third green stage	11.299
	SRR8316898	Complete white stage	9.313
	SRR8316899	Complete white stage	17.795
	SRR8316903	Complete white stage	17.167
	SRR8316902	Silver flowering stage	8.212
	SRR8316904	Silver flowering stage	13.253
	SRR8316905	Silver flowering stage	8.892
	SRR8316906	Gold flowering stage	15.275
	SRR8316907	Gold flowering stage	20.398
	SRR8316908	Gold flowering stage	22.676
SRP132670	SRR6706286	Control	21.458
	SRR6706287	Light intensity 50%	20.102
	SRR6706288	Light intensity 20%	18.501
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.589
	CNS0095593	Slightly white alabastrum(diploid) 2	11.943
	CNS0095594	Slightly white alabastrum(diploid) 3	13.867
	CNS0095595	Whole white alabastrum(diploid) 2	8.369
	CNS0095596	Whole white alabastrum(diploid) 3	4.370
	CNS0095597	Whole white alabastrum(diploid) 4	6.258
	CNS0095598	Silvery flower (diploied) 1	32.040
	CNS0095599	Silvery flower (diploied) 2	20.871
	CNS0095600	Silvery flower (diploied) 3	36.709
	CNS0095601	Golden flower (diploid) 1	18.765
	CNS0095602	Golden flower (diploid) 2	60.093
	CNS0095603	Golden flower (diploid) 3	54.955
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.574
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.875
	CNS0095610	Silvery flower (tetraploid) 1	23.220
	CNS0095611	Silvery flower (tetraploid) 2	29.319
	CNS0095612	Silvery flower (tetraploid) 3	35.989
	CNS0095613	Golden flower (tetraploid) 1	31.797
	CNS0095614	Golden flower (tetraploid) 2	33.297
	CNS0095615	Golden flower (tetraploid) 3	85.396
CRA001975	CRR073297	Stem 1	33.625
	CRR073298	Stem 2	33.288
	CRR073299	Stem 3	44.767
	CRR073300	Leaf 1	22.589
	CRR073301	Leaf 2	27.110
	CRR073302	Leaf 3	31.463
	CRR073303	Juvenile bud 1	31.096
	CRR073304	Juvenile bud 2	14.248
	CRR073305	Juvenile bud 3	30.255
	CRR073306	Third green 1	34.629
	CRR073307	Third green 2	60.154
	CRR073308	Third green 3	50.160
	CRR073309	Second white 1	27.875
	CRR073310	Second white 2	14.752
	CRR073311	Second white 3	11.043
	CRR073312	Silver flowering 1	13.331
	CRR073313	Silver flowering 2	20.489
	CRR073314	Silver flowering 3	17.364
	CRR073315	Gold flowering 1	18.068
	CRR073316	Gold flowering 2	17.774
	CRR073317	Gold flowering 3	28.587
	CRR073318	Tawny withering 1	47.362
	CRR073319	Tawny withering 2	29.607
	CRR073320	Tawny withering 3	48.385