Gene detail

Detail information of GWHGAAZE005314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU42019.1	0	hypothetical protein MIMGU_mgv1a003914mg [Erythranthe guttata]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	1E-62	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|A0A022RPP0\|A0A022RPP0_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU42019.1}
TAIR10	AT3G08760.1	8E-156	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5928920	5931567	-
GWHAAZE00000002	mRNA	5928920	5931567	-
GWHAAZE00000002	exon	5930932	5931567	-
GWHAAZE00000002	exon	5930533	5930790	-
GWHAAZE00000002	exon	5929995	5930114	-
GWHAAZE00000002	exon	5928920	5929860	-
GWHAAZE00000002	CDS	5930932	5931567	-
GWHAAZE00000002	CDS	5930533	5930790	-
GWHAAZE00000002	CDS	5929995	5930114	-
GWHAAZE00000002	CDS	5929252	5929860	-
GWHAAZE00000002	three_prime_UTR	5928920	5929251	-

Transcript Sequence
>GWHTAAZE005320 ATGATGGGATGTTTCACAGTTTCAAAGAGTAAGAAGAAACGTTCCGATGAGCAAACCATTTACGTAAAACCCACTAACCCTATAGAACAAACTGCCACTTCACTTCCTGAACCAAAAGTTAAAACGCGCTCTTTGCAATCTGCACCACCGAGCTTTAGAACCAGGGTGAAACCCATTCAGCCCGATGATAGAATAGTTAGAAGTAGAACAAGAACATTGTCCGCTGCTTCATTCTTGAACTCTACCGAACAAGATTATCTCTCATCAGTTGAATACGAGGAACAAGAAGAGCCCAAGAGCCGGTTCGGATCTATGAAAGAAAATAGGTCCCCAAGTCCTCAACCTCTTCCTCTTCCACCACCTCAGACTGCCTCAGTTTTGAAGACCATGGAAAGCTTCAAATTACGGAATGGAAGCGGCCCTGTCAATGCTTCTGGGCCACTGCCACTTCCTCCTACGGGAACACTACGAAACTTTTCGTATGAAGAAATTACAGCTGCCTGTTATAATTTCTTTCCCGAGCGATCCATTTCTGAAGGTTTTTCTTCGGTGATATACAGAGCTTCCTTTGGGGATGATACTTCTGGCGTGAAAAAACTTGAAGCTACTGTTACTTGCCTTAATCCGTCCACTCAGGGTTTGAAGGAATTTGTTAATGAGGTCAACACCCTTGCATCATTGCAGCATCCCAACCTTTGTAAACTGGTTGGTTTCCATGCACGCGAAGGATCAGAACGAAAGATGTTGGTTTACGAAAGGCTTTTCCATGGAAGTTTAGACCGGCTTTTGTATGGGAGATCCGACGGTCCTCCCATTGATTGGAATTCTAGAATGAAAGTTGCTTTATGCGCTGCCCAAGGCCTCACTTTCTTACATGAGGAAGGCCCTTTCCAGGCAATGTTCCATGAATTTTCTACTGGGAATATACAGATTGACAAAGATTTCAGTGCTAAACTTTCTGGATATGGTTGCATAAGCCACAGTCCAGATACGGATATCTCCGATAGTTCAGTTGCTGTAGGGAATCTTTCAACAGCGATGCAAGATAGAGGATTGCTCACACCCAAGAGCAATGTTTGGAGCTTTGGAATTATGCTTCTTGAATTGCTTATAGGCCGGAAAAATCTCGACAACCGCCATCCAAAGGAAGAAAGGAACTTAGTTAAGTGGAGCGGGCCCTACCTATCAGACGATAGCAGACTATCACTAATAATGGACCCTCGGCTAAAAGGTCGATTCCCAGCCAAGGCAGCCAGGATGGTGGCTGATGTAGCTCAAAGGTGTCTTAAAAATGATCCATCTGAACGGCCTACCATGAGGACCATTGTGGACCAACTCAAAGTAATACAAGAAATGAAATATTCTAGTTTGTTTCCACTGCAAGAGCCAGGTTCAGTTAGCAGGAGGAAAAATACGTCAAGATGGCCGAGCCTTGATAGGATCCTCAACCCACCTCCAGCTGCACCCAGACCATCTATTCCTACAACAAGGGCTCTTGGGCGGCCCTTGTCTCTTCCTCCTCAGACTTGTTTATCGGTTATTGTGTTGGAGGAAAATGATCGACAGGATATGCACAAATTATCTGCTTTGCCTATTCGAAGGTACGGTGTTGAAGGATTTTGAATGTTTTGTATAGAGTTTTTTCTTGAAAAGTAATTATATGGTATAAAGAAATATAACTATGTAGTTTGTCCGCCTTCCCTTTCCACAGGAAGATGATAAGAACGTCTTTTAGGGGTTGAATTGGTTTTCAGCTCCTCAGCAGGCCTAGTTTACTTGTATATTCGTCATCACATTTCCGTATATTTGCTGAACAACTCGAGTGAATGAGATTCTGAAGTAACAATTATTCATAATTCGAATTTGCTATGCCACGGGTGATATTGGTGACTGTATTGTCGATTAATCAATTGATAACACAACTGATTTAATTAGTTCACATCGATTTCTATAGA

Network for GWHGAAZE005314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	175	446	5.70E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.392
	SRR3591706	second leaf	10.642
	SRR3591707	mature leaf	21.668
	SRR3591708	Shoot apex	12.146
	SRR3591709	Stem	38.669
	SRR3591710	White floral bud	26.473
	SRR3591711	White flower	38.565
	SRR3591712	Green floral bud	14.449
	SRR3591713	Yellow flower	23.003
SRP173429	SRR8316895	Juvenile bud stage	16.421
	SRR8316896	Juvenile bud stage	11.973
	SRR8316897	Juvenile bud stage	14.834
	SRR8316894	Third green stage	4.692
	SRR8316900	Third green stage	11.408
	SRR8316901	Third green stage	12.272
	SRR8316898	Complete white stage	11.806
	SRR8316899	Complete white stage	34.375
	SRR8316903	Complete white stage	18.043
	SRR8316902	Silver flowering stage	12.644
	SRR8316904	Silver flowering stage	18.595
	SRR8316905	Silver flowering stage	8.481
	SRR8316906	Gold flowering stage	27.113
	SRR8316907	Gold flowering stage	21.255
	SRR8316908	Gold flowering stage	27.086
SRP132670	SRR6706286	Control	13.043
	SRR6706287	Light intensity 50%	12.072
	SRR6706288	Light intensity 20%	12.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.595
	CNS0095593	Slightly white alabastrum(diploid) 2	20.631
	CNS0095594	Slightly white alabastrum(diploid) 3	23.142
	CNS0095595	Whole white alabastrum(diploid) 2	16.546
	CNS0095596	Whole white alabastrum(diploid) 3	6.074
	CNS0095597	Whole white alabastrum(diploid) 4	16.127
	CNS0095598	Silvery flower (diploied) 1	41.448
	CNS0095599	Silvery flower (diploied) 2	28.674
	CNS0095600	Silvery flower (diploied) 3	30.130
	CNS0095601	Golden flower (diploid) 1	36.297
	CNS0095602	Golden flower (diploid) 2	37.896
	CNS0095603	Golden flower (diploid) 3	35.880
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.147
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.084
	CNS0095610	Silvery flower (tetraploid) 1	26.818
	CNS0095611	Silvery flower (tetraploid) 2	26.976
	CNS0095612	Silvery flower (tetraploid) 3	23.797
	CNS0095613	Golden flower (tetraploid) 1	15.507
	CNS0095614	Golden flower (tetraploid) 2	19.641
	CNS0095615	Golden flower (tetraploid) 3	26.326
CRA001975	CRR073297	Stem 1	18.653
	CRR073298	Stem 2	15.285
	CRR073299	Stem 3	14.500
	CRR073300	Leaf 1	20.232
	CRR073301	Leaf 2	21.471
	CRR073302	Leaf 3	15.080
	CRR073303	Juvenile bud 1	21.896
	CRR073304	Juvenile bud 2	24.606
	CRR073305	Juvenile bud 3	29.289
	CRR073306	Third green 1	28.935
	CRR073307	Third green 2	18.234
	CRR073308	Third green 3	23.845
	CRR073309	Second white 1	18.925
	CRR073310	Second white 2	23.898
	CRR073311	Second white 3	21.903
	CRR073312	Silver flowering 1	20.635
	CRR073313	Silver flowering 2	15.890
	CRR073314	Silver flowering 3	17.954
	CRR073315	Gold flowering 1	21.556
	CRR073316	Gold flowering 2	39.745
	CRR073317	Gold flowering 3	32.723
	CRR073318	Tawny withering 1	24.838
	CRR073319	Tawny withering 2	66.728
	CRR073320	Tawny withering 3	28.082