Gene detail

Detail information of GWHGAAZE005300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006429632.1	0	hypothetical protein CICLE_v10011280mg [Citrus clementina]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|V4SQA6\|V4SQA6_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR42872.1}
TAIR10	AT5G58300.2	4E-171	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5733327	5735482	+
GWHAAZE00000002	mRNA	5733327	5735482	+
GWHAAZE00000002	exon	5733327	5734671	+
GWHAAZE00000002	exon	5734881	5735482	+
GWHAAZE00000002	CDS	5733327	5734671	+
GWHAAZE00000002	CDS	5734881	5735482	+

Transcript Sequence
>GWHTAAZE005306 ATGAAGCTACTCTGTTTTGCCACTCTACCTTTTTTGCTCTTACTAGTTCTCCTCTTCCCCATAACTAATGCGGACCTGAATTCCGACAAAAGAGCACTCCTCGACTTTGCTACCGCTGTCCCTCATGGCAGGAAACTCAACTGGAGTAATTCTTCTTCAGTATGCAACTCTTGGGTCGGTATCACATGCACCTCCAATGGCAAACGCGTACTTCAACTCCGGCTTCCTGGTGTTGGACTCTATGGTACAATCCCATCAAACACTCTTGTAAAGCTAGATGCTCTCACTGTCCTTAGCCTACGATCTAATGGCCTCAATGGGAATCTTCCGTCTGATATCCTTTCCCTTGCTTCTCTCCGCTCCATTTACCTCCAAGAAAACAATTTCTCGGGCAATATTCCTTCCGCATTCTCTCCCCAACTCAACTTGATTGATCTTTCCTTCAATTCCTTCACCGGTAGTATTCCATCTGCAATCCAAAACCTAACACTCCTCGCCAGTTTGAACCTTCAAAATAACTCCCTCACGGGATCCATCCCAGATTTCAACCTTCCGAGACTAAAGAGTTTGAGCTTGAGTAATAACCACCTTAACGGTTCAATTCCATCATCCCTCCGAGACTTCCCTGCCTCCTCATTTCAAGGTAACTCTATGTTATGTGGGGCACCCTTGAACCGGTGCGCTTCCATCACCCCCTCCCCCTCGCCCTCACCTTCCCCTTATCCAGCTTCTTTGCCACCAACTCCTTCACAAAACAACTCGCCACCTTCTCCGTCCTTGGTTTTCTCACCACCCATACCAACAGTCCCTCAAACACAAAAGGCAAAGAAGGAATTCAGCAAGGGTGCAATTATTGCCATTGCAATGGGTGTTTCCGCTGGGGTTTTCGGTCTTCTTCTAGTGATATTGATGTGCTTTGTGAAGAAAAAGAAGAAAGAAAGCGGCGTATTGAAAGGGAAAGGGTTCGGTGTTGGAAGTGAGAAGCCTAAACAAGGATTTGGGAGTGGGGTACAAGACGCTGAGAAGAACAAATTGGTGTTCTTTAAAAGCTGTTCTTATAACTTTGATCTTGAGGATTTACTTAGAGCCTCTGCCGAAGTGCTGGGAAAGGGCAGTTATGGTACAACCTACAAAGCTATCTTAGAGGAAGGAACAATGGTGGTTGTGAAGAGACTTAAAGAAGTGGTAGTAGGGAGAAAAGAGTTTGAACAACAGATGGAGATTGTGGGGAGTGTAGAGCAGCACCCAAATGTTGTGCCTCCTCGTGCTTATTATTATTCCAAGGACGAGAAACTCATTGTTAATGACTACATAACACTCGGAAGCTTGTCCACAATATTACACGGACATGTGGATTCTGGAAGGATACTTGATTGGGAATCTAGAGTAAAAATCTCCCTAGGAGCCGCAAAGGGTATTGCTCATCTTCATTCTATTGGTAGTGGGAAATTAACGCACGGAAACATAAAGTCCTCTAACGTACTCCTTACCCAAGACTTCAATGGATGCATATCGGACTTCGGCCTAACTCCTCTTATGGGCACACCACCCATTCAACCTAAAAGTCCAGGCTACCGAGCACCCGAGGTGATTGAAACTAGGAAAGCTACTCAGAAATCTGACATTTACAGCTTTGGGGTTCTACTCCTCGAGATGCTGACTGGCAAAGCACCAGTGCAGTCAGCAGGGCATGATGACGTGGTCGATCTCCCTAGGTGGGTCCAGTCTGTAGTTAGAGAGGAATGGACAGCAGAGGTATTTGATATTGAGTTGATGAAGTATGCCAATATTGAAGAAGAGATGGTGCAGATGCTTCAGATTGCAATGGCCTGTGTGGCAATTGCGCCTGATATGAGACCTAAGATGGATCAAGTTGTTGGGATGATAGAGGAAATTCGGCTGTCCAGTGATAGCATGTCTAAGAGTCCAAGTATTCTGTCACCTTGA

Network for GWHGAAZE005300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	63	1.90E-08
PF00069.26	Pkinase	365	626	9.80E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.609
	SRR3591706	second leaf	0.277
	SRR3591707	mature leaf	0.059
	SRR3591708	Shoot apex	0.847
	SRR3591709	Stem	0.547
	SRR3591710	White floral bud	0.402
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.379
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.191
	SRR8316896	Juvenile bud stage	0.605
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.033
	SRR8316901	Third green stage	0.117
	SRR8316898	Complete white stage	0.018
	SRR8316899	Complete white stage	0.046
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.366
	SRR8316905	Silver flowering stage	0.030
	SRR8316906	Gold flowering stage	0.006
	SRR8316907	Gold flowering stage	0.002
	SRR8316908	Gold flowering stage	0.104
SRP132670	SRR6706286	Control	0.047
	SRR6706287	Light intensity 50%	0.116
	SRR6706288	Light intensity 20%	0.101
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.400
	CNS0095593	Slightly white alabastrum(diploid) 2	0.065
	CNS0095594	Slightly white alabastrum(diploid) 3	0.516
	CNS0095595	Whole white alabastrum(diploid) 2	0.059
	CNS0095596	Whole white alabastrum(diploid) 3	0.071
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.078
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.046
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.089
	CNS0095603	Golden flower (diploid) 3	0.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.273
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.080
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.303
	CNS0095610	Silvery flower (tetraploid) 1	0.145
	CNS0095611	Silvery flower (tetraploid) 2	0.314
	CNS0095612	Silvery flower (tetraploid) 3	0.238
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	0.343
	CRR073298	Stem 2	0.236
	CRR073299	Stem 3	0.318
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.023
	CRR073302	Leaf 3	0.115
	CRR073303	Juvenile bud 1	0.002
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.004
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.297
	CRR073309	Second white 1	0.022
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.266
	CRR073316	Gold flowering 2	0.071
	CRR073317	Gold flowering 3	0.457
	CRR073318	Tawny withering 1	22.273
	CRR073319	Tawny withering 2	4.228
	CRR073320	Tawny withering 3	33.957