Detail information of GWHGAAZE005283


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009606104.10PREDICTED: cell division control protein 2 homolog C [Nicotiana tomentosiformis]
Swissprottr|Q38774|CDC2C_ANTMA0Cell division control protein 2 homolog C
trEMBLtr|Q9FYT8|Q9FYT8_TOBAC0Cyclin-dependent kinase B1-2 {ECO:0000313|EMBL:AAG01533.1}
TAIR10AT2G38620.23E-155cyclin-dependent kinase B1;2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene54431145445732-
GWHAAZE00000002mRNA54431145445732-
GWHAAZE00000002exon54453235445732-
GWHAAZE00000002exon54450665445177-
GWHAAZE00000002exon54448465444939-
GWHAAZE00000002exon54440205444089-
GWHAAZE00000002exon54435295443667-
GWHAAZE00000002exon54431145443313-
GWHAAZE00000002CDS54453235445732-
GWHAAZE00000002CDS54450665445177-
GWHAAZE00000002CDS54448465444939-
GWHAAZE00000002CDS54440205444089-
GWHAAZE00000002CDS54435295443667-
GWHAAZE00000002CDS54432215443313-
GWHAAZE00000002three_prime_UTR54431145443220-
Transcript Sequence

Network for GWHGAAZE005283

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase42972.70E-66
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-Pl

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.446
SRR3591706second leaf27.012
SRR3591707mature leaf6.513
SRR3591708Shoot apex164.595
SRR3591709Stem29.506
SRR3591710White floral bud5.066
SRR3591711White flower2.905
SRR3591712Green floral bud8.702
SRR3591713Yellow flower2.064
SRP173429 SRR8316895Juvenile bud stage 27.092
SRR8316896Juvenile bud stage 23.412
SRR8316897Juvenile bud stage 11.399
SRR8316894Third green stage 6.727
SRR8316900Third green stage 8.253
SRR8316901Third green stage 7.259
SRR8316898Complete white stage 0.636
SRR8316899Complete white stage 2.675
SRR8316903Complete white stage 1.860
SRR8316902Silver flowering stage0.003
SRR8316904Silver flowering stage0.325
SRR8316905Silver flowering stage0.061
SRR8316906Gold flowering stage 0.165
SRR8316907Gold flowering stage 0.070
SRR8316908Gold flowering stage 0.783
SRP132670SRR6706286Control6.862
SRR6706287Light intensity 50%6.543
SRR6706288Light intensity 20%9.303
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.187
CNS0095593Slightly white alabastrum(diploid) 218.050
CNS0095594Slightly white alabastrum(diploid) 318.404
CNS0095595Whole white alabastrum(diploid) 29.894
CNS0095596Whole white alabastrum(diploid) 35.739
CNS0095597Whole white alabastrum(diploid) 46.450
CNS0095598Silvery flower (diploied) 112.524
CNS0095599Silvery flower (diploied) 29.450
CNS0095600Silvery flower (diploied) 34.216
CNS0095601Golden flower (diploid) 14.187
CNS0095602Golden flower (diploid) 24.234
CNS0095603Golden flower (diploid) 33.019
CNS0095604Slightly white alabastrum(tetraploid) 116.874
CNS0095605Slightly white alabastrum(tetraploid) 216.963
CNS0095606Slightly white alabastrum(tetraploid) 328.017
CNS0095607Whole white alabastrum(tetraploid) 113.216
CNS0095608Whole white alabastrum(tetraploid) 23.194
CNS0095609Whole white alabastrum(tetraploid) 34.315
CNS0095610Silvery flower (tetraploid) 11.131
CNS0095611Silvery flower (tetraploid) 22.144
CNS0095612Silvery flower (tetraploid) 31.099
CNS0095613Golden flower (tetraploid) 10.614
CNS0095614Golden flower (tetraploid) 20.498
CNS0095615Golden flower (tetraploid) 30.514
CRA001975CRR073297Stem 129.462
CRR073298Stem 228.952
CRR073299Stem 351.244
CRR073300Leaf 18.701
CRR073301Leaf 27.761
CRR073302Leaf 35.611
CRR073303Juvenile bud 14.249
CRR073304Juvenile bud 21.739
CRR073305Juvenile bud 35.346
CRR073306Third green 11.238
CRR073307Third green 20.775
CRR073308Third green 31.381
CRR073309Second white 10.049
CRR073310Second white 20.003
CRR073311Second white 30.479
CRR073312Silver flowering 10.447
CRR073313Silver flowering 20.055
CRR073314Silver flowering 30.131
CRR073315Gold flowering 11.741
CRR073316Gold flowering 21.848
CRR073317Gold flowering 32.505
CRR073318Tawny withering 159.276
CRR073319Tawny withering 250.820
CRR073320Tawny withering 363.704