Detail information of GWHGAAZE005275


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264349.10PREDICTED: protein SCARECROW [Vitis vinifera]
Swissprottr|Q2Z2E9|SCR_IPONI0Protein SCARECROW
trEMBLtr|F6HMQ2|F6HMQ2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55927.1}
TAIR10AT3G54220.10GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene52861815289220-
GWHAAZE00000002mRNA52861815289220-
GWHAAZE00000002exon52861815286643-
GWHAAZE00000002exon52871945288844-
GWHAAZE00000002exon52889355289220-
GWHAAZE00000002CDS52889355289220-
GWHAAZE00000002CDS52871945288844-
GWHAAZE00000002CDS52861815286643-
Transcript Sequence

Network for GWHGAAZE005275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS4297856.70E-125
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.813
SRR3591706second leaf1.579
SRR3591707mature leaf0.316
SRR3591708Shoot apex18.087
SRR3591709Stem22.588
SRR3591710White floral bud6.506
SRR3591711White flower1.171
SRR3591712Green floral bud11.320
SRR3591713Yellow flower0.166
SRP173429 SRR8316895Juvenile bud stage 4.984
SRR8316896Juvenile bud stage 3.809
SRR8316897Juvenile bud stage 2.830
SRR8316894Third green stage 5.452
SRR8316900Third green stage 15.310
SRR8316901Third green stage 14.472
SRR8316898Complete white stage 7.874
SRR8316899Complete white stage 35.244
SRR8316903Complete white stage 20.645
SRR8316902Silver flowering stage3.934
SRR8316904Silver flowering stage7.206
SRR8316905Silver flowering stage3.368
SRR8316906Gold flowering stage 0.786
SRR8316907Gold flowering stage 2.033
SRR8316908Gold flowering stage 0.922
SRP132670SRR6706286Control23.315
SRR6706287Light intensity 50%20.721
SRR6706288Light intensity 20%21.429
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.856
CNS0095593Slightly white alabastrum(diploid) 28.937
CNS0095594Slightly white alabastrum(diploid) 34.459
CNS0095595Whole white alabastrum(diploid) 26.434
CNS0095596Whole white alabastrum(diploid) 31.482
CNS0095597Whole white alabastrum(diploid) 45.942
CNS0095598Silvery flower (diploied) 12.921
CNS0095599Silvery flower (diploied) 23.097
CNS0095600Silvery flower (diploied) 34.506
CNS0095601Golden flower (diploid) 10.713
CNS0095602Golden flower (diploid) 21.089
CNS0095603Golden flower (diploid) 30.680
CNS0095604Slightly white alabastrum(tetraploid) 119.479
CNS0095605Slightly white alabastrum(tetraploid) 212.460
CNS0095606Slightly white alabastrum(tetraploid) 363.129
CNS0095607Whole white alabastrum(tetraploid) 116.020
CNS0095608Whole white alabastrum(tetraploid) 213.379
CNS0095609Whole white alabastrum(tetraploid) 35.661
CNS0095610Silvery flower (tetraploid) 15.616
CNS0095611Silvery flower (tetraploid) 22.664
CNS0095612Silvery flower (tetraploid) 30.592
CNS0095613Golden flower (tetraploid) 10.455
CNS0095614Golden flower (tetraploid) 20.520
CNS0095615Golden flower (tetraploid) 30.172
CRA001975CRR073297Stem 120.044
CRR073298Stem 224.470
CRR073299Stem 311.064
CRR073300Leaf 135.478
CRR073301Leaf 240.023
CRR073302Leaf 318.624
CRR073303Juvenile bud 127.123
CRR073304Juvenile bud 214.129
CRR073305Juvenile bud 378.002
CRR073306Third green 16.654
CRR073307Third green 26.104
CRR073308Third green 310.152
CRR073309Second white 10.000
CRR073310Second white 20.124
CRR073311Second white 30.085
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.500
CRR073316Gold flowering 20.456
CRR073317Gold flowering 30.356
CRR073318Tawny withering 13.693
CRR073319Tawny withering 20.607
CRR073320Tawny withering 33.567