Detail information of GWHGAAZE005264


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009379760.10PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 [Pyrus x bretschneideri]
Swissprottr|Q9LMB9|CRK1_ARATH6E-53Cysteine-rich receptor-like protein kinase 1 (Precursor)
trEMBLtr|B9SHK5|B9SHK5_RICCO0Serine-threonine protein kinase, plant-type, putative {ECO:0000313|EMBL:EEF36964.1}
TAIR10AT2G19230.11E-48Leucine-rich repeat transmembrane protein kinase protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene51623575165034-
GWHAAZE00000002mRNA51623575165034-
GWHAAZE00000002exon51623575162425-
GWHAAZE00000002exon51625205162723-
GWHAAZE00000002exon51628285163088-
GWHAAZE00000002exon51634705163585-
GWHAAZE00000002exon51636995164142-
GWHAAZE00000002exon51642425164265-
GWHAAZE00000002exon51645145164770-
GWHAAZE00000002exon51648745165034-
GWHAAZE00000002CDS51648745165034-
GWHAAZE00000002CDS51645145164770-
GWHAAZE00000002CDS51642425164265-
GWHAAZE00000002CDS51636995164142-
GWHAAZE00000002CDS51634705163585-
GWHAAZE00000002CDS51628285163088-
GWHAAZE00000002CDS51625205162723-
GWHAAZE00000002CDS51623575162425-
Transcript Sequence

Network for GWHGAAZE005264

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase2144702.00E-46
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_URK-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.003
SRR3591708Shoot apex0.084
SRR3591709Stem0.268
SRR3591710White floral bud0.105
SRR3591711White flower0.044
SRR3591712Green floral bud0.011
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.097
SRR8316896Juvenile bud stage 0.049
SRR8316897Juvenile bud stage 0.139
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.035
SRR8316901Third green stage 0.075
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.397
SRR8316903Complete white stage 0.071
SRR8316902Silver flowering stage0.058
SRR8316904Silver flowering stage0.095
SRR8316905Silver flowering stage0.047
SRR8316906Gold flowering stage 0.100
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.052
SRR6706287Light intensity 50%0.057
SRR6706288Light intensity 20%0.026
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.122
CNS0095595Whole white alabastrum(diploid) 20.247
CNS0095596Whole white alabastrum(diploid) 30.151
CNS0095597Whole white alabastrum(diploid) 40.038
CNS0095598Silvery flower (diploied) 10.435
CNS0095599Silvery flower (diploied) 20.256
CNS0095600Silvery flower (diploied) 30.052
CNS0095601Golden flower (diploid) 10.021
CNS0095602Golden flower (diploid) 20.075
CNS0095603Golden flower (diploid) 30.116
CNS0095604Slightly white alabastrum(tetraploid) 10.017
CNS0095605Slightly white alabastrum(tetraploid) 20.216
CNS0095606Slightly white alabastrum(tetraploid) 30.134
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.116
CNS0095610Silvery flower (tetraploid) 10.038
CNS0095611Silvery flower (tetraploid) 20.102
CNS0095612Silvery flower (tetraploid) 30.155
CNS0095613Golden flower (tetraploid) 10.008
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.018
CRA001975CRR073297Stem 10.002
CRR073298Stem 20.268
CRR073299Stem 30.000
CRR073300Leaf 10.016
CRR073301Leaf 20.082
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.001
CRR073308Third green 30.043
CRR073309Second white 10.000
CRR073310Second white 20.003
CRR073311Second white 30.002
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000