Gene detail

Detail information of GWHGAAZE005260

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648986.1	0	PREDICTED: uncharacterized protein LOC100256234 [Vitis vinifera]
Swissprot	tr\|P0DH62\|Y4407_SELML	5E-61	Inactive protein kinase SELMODRAFT_444075
trEMBL	tr\|W9SCQ5\|W9SCQ5_9ROSA	3E-175	Inactive protein kinase {ECO:0000313\|EMBL:EXC21746.1}
TAIR10	AT1G55200.1	8E-92	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5122641	5125088	+
GWHAAZE00000002	mRNA	5122641	5125088	+
GWHAAZE00000002	exon	5122641	5122769	+
GWHAAZE00000002	exon	5122919	5123013	+
GWHAAZE00000002	exon	5123199	5123752	+
GWHAAZE00000002	exon	5123835	5124371	+
GWHAAZE00000002	exon	5124728	5124900	+
GWHAAZE00000002	exon	5125005	5125088	+
GWHAAZE00000002	CDS	5122641	5122769	+
GWHAAZE00000002	CDS	5122919	5123013	+
GWHAAZE00000002	CDS	5123199	5123752	+
GWHAAZE00000002	CDS	5123835	5124371	+
GWHAAZE00000002	CDS	5124728	5124900	+
GWHAAZE00000002	CDS	5125005	5125088	+

Transcript Sequence
>GWHTAAZE005266 ATGAGTAATGGGCAGGACTCATTTGATAAGAATGGTTTTGTTGATGATGGAAGTGATATGCCTCAGAGAATATACAATGTTTGTGCATGGATGATAAAACAACTATTCAAGCTGCATAATGTTGTAAAGGTTGTTACCCAAGTAAAAGTTGTAGCTTATGCTCCTGTGGGATCAATTGCAATGGCAGCAGCAGAACTTGGAGCAACATGGGTCATTCTCGATCGACGCTTGAAGAAGGAAAGTGACTGCTGTTTGAAGCAGTTGAACTGCAATATCATTCTCATAGATCATGCCATTCCAAAAATCCTAAGATCATCTGTTAAATTCCCGACATCAAAAAAATCCGACAAGATGCGTTCCCTTAGCGACCCCACAGTGGCTGACATGCTAGGTGTAGTTCCCATTTATAATATTCCACCAGATAATCACAAGAGTCCAACATCAACTCAAAGCAGTCTTCGATCATACACTACAAAAACAGATACAACTATGTATACTTCATCTTCATCATCAAGCACAAACAAAGACTATTTCCTGTCGACTAGCCCTCCTCCAGTCATCAAATTGAAGCCGGTTGATACCTCTCCCCGTTTAAGTACCTATGCTTCTCAGCCTGAAGGGGATACTAAAGTAATTTACAGACCCACCACTTACAGTAGCAAATCTCAACCATTGAATAAGGTGCTAAAGTTTGAGGATGAAGCCCCTCGAAAGTCGACAGCAATCAGAACAGGAGACAGAACCAAAAGTGGCAGCGTCCTTTTGAAGACTAGAACTGATATAAACAAAAACAATTCTGCAAGGACAGCACCTTTTCCACCAAGAAGATCAGTAGATTCTCGACACACAAAAAGACCAAGGATTCCAAATAAATCAGAAGATCCCTTTCCCAGAACATTAGACCGAACCTCGAGCATTAGGCGGGCCATGTCTATCTCAATCAAAAAGCCACAAGCGCCTCCACCCCTTTGTTCAGTTTGCAAGCACAACGCCCCAGTCTTTGGTAGGGCCCCACGAAAATTCAGTTACAGTGAAATTGAAACAGCAACGGATGGATTCTCGACTGACAATTTCTTGGCAAAGGGTGGGTACGGGAAAGTGTACAGGGGAGTGTTAGCTGATGGGCAAGTTATTGCAGTGAAACAGCATGTGATGTTGAATGCCCAAGGAGCATCAGAGTTCTGTTGTGGGGTTGAAGTTTTGAGCTGTGCACAGCACAGGAATTTGGTAATGCTGGTGGGTTACTGCTTCGAGATCGAATGGCTTCTTGTCTATGAGTTTGCTTGTAATGGCTCCTTGGACAAGCATTTACATGGAACTGAGAAAACTGAAGTAATGGCTTGGGATAACAGGATGAGGGTTGCAATTGGATCGGCAAGAGGTCTGAGATATCTTCACGAAGATTGCAGGGTCGGTTGTATCGTCCACAGAGACTTCAGACCTAACAACATCCTCCTAACACATGACTATGAACCCATGGTCAGTCGAGTTGGAGATTTTGGTCTGGCAAGGTGGCAAGTGGATGGTCAATCTGGGGAGGAGACGTGCGTGATTGGTGCATTCGGGTATTAA

Network for GWHGAAZE005260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0039	Protein Kinases RLK-Pelle_PERK-2 family Protein Kinases RLK-Pelle_PERK-2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	356	506	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.084
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.257
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.055
	SRR8316896	Juvenile bud stage	6.744
	SRR8316897	Juvenile bud stage	0.280
	SRR8316894	Third green stage	4.551
	SRR8316900	Third green stage	0.136
	SRR8316901	Third green stage	1.189
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.204
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.323
	SRR6706287	Light intensity 50%	1.465
	SRR6706288	Light intensity 20%	0.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.811
	CNS0095593	Slightly white alabastrum(diploid) 2	0.427
	CNS0095594	Slightly white alabastrum(diploid) 3	2.370
	CNS0095595	Whole white alabastrum(diploid) 2	0.052
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.239
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.590
	CRR073298	Stem 2	8.864
	CRR073299	Stem 3	2.318
	CRR073300	Leaf 1	0.105
	CRR073301	Leaf 2	0.372
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.051
	CRR073304	Juvenile bud 2	0.024
	CRR073305	Juvenile bud 3	0.335
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000