Detail information of GWHGAAZE005255


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80661.13.22906E-78hypothetical protein VITISV_003333 [Vitis vinifera]
Swissprottr|Q5S2C3|PIR_ARATH4E-65Protein PIR
trEMBLtr|A5B0X3|A5B0X3_VITVI1E-78Putative uncharacterized protein {ECO:0000313|EMBL:CAN80661.1}
TAIR10AT5G18410.24E-57transcription activators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene50021875002689+
GWHAAZE00000002mRNA50021875002689+
GWHAAZE00000002exon50021875002384+
GWHAAZE00000002exon50024955002689+
GWHAAZE00000002CDS50021875002384+
GWHAAZE00000002CDS50024955002689+
Transcript Sequence

Network for GWHGAAZE005255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05994.12FragX_IP10892.70E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05749CYFIP RNA transport map03013
Regulation of actin cytoskeletonmap04810

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf50.355
SRR3591706second leaf24.546
SRR3591707mature leaf14.239
SRR3591708Shoot apex39.480
SRR3591709Stem56.062
SRR3591710White floral bud22.652
SRR3591711White flower26.885
SRR3591712Green floral bud44.777
SRR3591713Yellow flower15.675
SRP173429 SRR8316895Juvenile bud stage 23.757
SRR8316896Juvenile bud stage 37.857
SRR8316897Juvenile bud stage 15.331
SRR8316894Third green stage 13.322
SRR8316900Third green stage 38.137
SRR8316901Third green stage 45.543
SRR8316898Complete white stage 7.149
SRR8316899Complete white stage 31.986
SRR8316903Complete white stage 11.234
SRR8316902Silver flowering stage8.752
SRR8316904Silver flowering stage7.914
SRR8316905Silver flowering stage3.510
SRR8316906Gold flowering stage 17.686
SRR8316907Gold flowering stage 20.573
SRR8316908Gold flowering stage 13.908
SRP132670SRR6706286Control22.678
SRR6706287Light intensity 50%25.699
SRR6706288Light intensity 20%29.497
CNP0000432CNS0095592Slightly white alabastrum(diploid) 167.412
CNS0095593Slightly white alabastrum(diploid) 275.844
CNS0095594Slightly white alabastrum(diploid) 373.862
CNS0095595Whole white alabastrum(diploid) 261.220
CNS0095596Whole white alabastrum(diploid) 369.052
CNS0095597Whole white alabastrum(diploid) 446.155
CNS0095598Silvery flower (diploied) 129.063
CNS0095599Silvery flower (diploied) 232.503
CNS0095600Silvery flower (diploied) 321.141
CNS0095601Golden flower (diploid) 130.458
CNS0095602Golden flower (diploid) 225.910
CNS0095603Golden flower (diploid) 327.517
CNS0095604Slightly white alabastrum(tetraploid) 155.912
CNS0095605Slightly white alabastrum(tetraploid) 261.122
CNS0095606Slightly white alabastrum(tetraploid) 352.538
CNS0095607Whole white alabastrum(tetraploid) 154.367
CNS0095608Whole white alabastrum(tetraploid) 246.861
CNS0095609Whole white alabastrum(tetraploid) 350.029
CNS0095610Silvery flower (tetraploid) 123.488
CNS0095611Silvery flower (tetraploid) 221.579
CNS0095612Silvery flower (tetraploid) 326.157
CNS0095613Golden flower (tetraploid) 116.042
CNS0095614Golden flower (tetraploid) 222.527
CNS0095615Golden flower (tetraploid) 321.670
CRA001975CRR073297Stem 151.305
CRR073298Stem 247.468
CRR073299Stem 345.277
CRR073300Leaf 155.784
CRR073301Leaf 256.673
CRR073302Leaf 331.807
CRR073303Juvenile bud 146.671
CRR073304Juvenile bud 222.839
CRR073305Juvenile bud 350.406
CRR073306Third green 112.525
CRR073307Third green 29.477
CRR073308Third green 312.560
CRR073309Second white 112.216
CRR073310Second white 216.065
CRR073311Second white 312.565
CRR073312Silver flowering 16.254
CRR073313Silver flowering 211.969
CRR073314Silver flowering 311.292
CRR073315Gold flowering 115.928
CRR073316Gold flowering 216.546
CRR073317Gold flowering 310.825
CRR073318Tawny withering 156.415
CRR073319Tawny withering 256.337
CRR073320Tawny withering 357.557