Detail information of GWHGAAZE005253


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002325366.11.20349E-72hypothetical protein POPTR_0019s04210g [Populus trichocarpa]
Swissprottr|Q5S2C3|PIR_ARATH8E-59Protein PIR
trEMBLtr|B9IPF8|B9IPF8_POPTR4E-73Uncharacterized protein {ECO:0000313|EMBL:EEE99747.1}
TAIR10AT5G18410.28E-52transcription activators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene49795934981310+
GWHAAZE00000002mRNA49795934981310+
GWHAAZE00000002exon49795934979815+
GWHAAZE00000002exon49810094981181+
GWHAAZE00000002exon49812874981310+
GWHAAZE00000002CDS49795934979815+
GWHAAZE00000002CDS49810094981181+
GWHAAZE00000002CDS49812874981310+
Transcript Sequence

Network for GWHGAAZE005253

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05994.12FragX_IP61324.20E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05749CYFIP RNA transport map03013
Regulation of actin cytoskeletonmap04810

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.878
SRR3591706second leaf19.543
SRR3591707mature leaf13.056
SRR3591708Shoot apex27.874
SRR3591709Stem40.971
SRR3591710White floral bud16.056
SRR3591711White flower22.195
SRR3591712Green floral bud38.931
SRR3591713Yellow flower10.749
SRP173429 SRR8316895Juvenile bud stage 19.498
SRR8316896Juvenile bud stage 23.336
SRR8316897Juvenile bud stage 12.470
SRR8316894Third green stage 13.112
SRR8316900Third green stage 32.030
SRR8316901Third green stage 34.294
SRR8316898Complete white stage 5.968
SRR8316899Complete white stage 24.395
SRR8316903Complete white stage 10.806
SRR8316902Silver flowering stage4.234
SRR8316904Silver flowering stage7.109
SRR8316905Silver flowering stage2.521
SRR8316906Gold flowering stage 17.648
SRR8316907Gold flowering stage 13.777
SRR8316908Gold flowering stage 10.769
SRP132670SRR6706286Control32.747
SRR6706287Light intensity 50%32.822
SRR6706288Light intensity 20%35.880
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.676
CNS0095593Slightly white alabastrum(diploid) 234.104
CNS0095594Slightly white alabastrum(diploid) 331.340
CNS0095595Whole white alabastrum(diploid) 227.637
CNS0095596Whole white alabastrum(diploid) 333.676
CNS0095597Whole white alabastrum(diploid) 428.690
CNS0095598Silvery flower (diploied) 122.626
CNS0095599Silvery flower (diploied) 216.893
CNS0095600Silvery flower (diploied) 319.334
CNS0095601Golden flower (diploid) 120.603
CNS0095602Golden flower (diploid) 221.019
CNS0095603Golden flower (diploid) 320.906
CNS0095604Slightly white alabastrum(tetraploid) 145.014
CNS0095605Slightly white alabastrum(tetraploid) 236.516
CNS0095606Slightly white alabastrum(tetraploid) 346.363
CNS0095607Whole white alabastrum(tetraploid) 131.340
CNS0095608Whole white alabastrum(tetraploid) 235.257
CNS0095609Whole white alabastrum(tetraploid) 337.176
CNS0095610Silvery flower (tetraploid) 117.558
CNS0095611Silvery flower (tetraploid) 222.349
CNS0095612Silvery flower (tetraploid) 323.362
CNS0095613Golden flower (tetraploid) 110.044
CNS0095614Golden flower (tetraploid) 218.519
CNS0095615Golden flower (tetraploid) 316.246
CRA001975CRR073297Stem 122.354
CRR073298Stem 225.341
CRR073299Stem 326.039
CRR073300Leaf 125.950
CRR073301Leaf 220.574
CRR073302Leaf 314.124
CRR073303Juvenile bud 117.926
CRR073304Juvenile bud 214.278
CRR073305Juvenile bud 330.770
CRR073306Third green 16.239
CRR073307Third green 24.462
CRR073308Third green 34.578
CRR073309Second white 15.294
CRR073310Second white 26.021
CRR073311Second white 37.413
CRR073312Silver flowering 13.155
CRR073313Silver flowering 24.529
CRR073314Silver flowering 36.127
CRR073315Gold flowering 18.292
CRR073316Gold flowering 27.791
CRR073317Gold flowering 35.314
CRR073318Tawny withering 118.275
CRR073319Tawny withering 214.376
CRR073320Tawny withering 324.081