Gene detail

Detail information of GWHGAAZE005252

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002325365.1	4.9139E-152	hypothetical protein POPTR_0019s04200g [Populus trichocarpa]
Swissprot	tr\|Q5S2C3\|PIR_ARATH	3E-139	Protein PIR
trEMBL	tr\|B9IPF7\|B9IPF7_POPTR	2E-152	Uncharacterized protein {ECO:0000313\|EMBL:EEE99746.1}
TAIR10	AT5G18410.3	2E-120	transcription activators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	4956529	4963082	+
GWHAAZE00000002	mRNA	4956529	4963082	+
GWHAAZE00000002	exon	4956529	4956603	+
GWHAAZE00000002	exon	4956682	4956825	+
GWHAAZE00000002	exon	4956983	4957132	+
GWHAAZE00000002	exon	4957693	4957836	+
GWHAAZE00000002	exon	4960065	4960152	+
GWHAAZE00000002	exon	4962925	4963082	+
GWHAAZE00000002	CDS	4956529	4956603	+
GWHAAZE00000002	CDS	4956682	4956825	+
GWHAAZE00000002	CDS	4956983	4957132	+
GWHAAZE00000002	CDS	4957693	4957836	+
GWHAAZE00000002	CDS	4960065	4960152	+
GWHAAZE00000002	CDS	4962925	4963082	+

Transcript Sequence
>GWHTAAZE005258 ATGAACAAAGTATTCAGAGAGAACATTGAATTTTTGTTTGATCGTTTCGAGTCTCAGGATCTATGTGCTATTGTGGAGTTGGAAAAGCTCCTTGGTATCTTGCAACTTGCTCATGAATTACTATCCAAGGATCTGTCAATTGATTCATTTAGTCTCATGTTGAATGAGATGCAAGAGAATATATCTCTCGTTTCATATTCTAGTCGACTTGCTTCTCAGATTTGGACGGAGATGCAAAATGATTTCTTGCCGAACTTCATCCTCTGTAATACGACTCAACGCTTTGTCAGATCATCAAAAGTACCCCTTGTTCCCGTTCAGAAACCATCAGTTCCGTATGCCAAGCCAAATTTCTATTGTGGTACTCAAGATTTAAATTCTGCGCACCAAAACTTTGCACGATTACACAATGCATTTTTTGGATTGCCTCATATGTTCTCCATTGTAAGGCTTCTTGGGTCTAGATCATTGCCTTGGCTTATTCGAGCACTACTTGATCATATATCAAATAAGATAACTACCCTCGAGCCACTGATTACAGGATTACAGGAGGCATTACCAAAGTCTATTGGATTACTTCCTTTTGATGGAGGTGTAACAGGTTGTAAGAGGCTTGTTAAAGAACATCTCAAGTGGCAATCAAAATCAGAACTCAAAGCAGAAGTTATTCGCGGAATAAAGGAGATTGGAAGCATATTATACTGGATGGGTCTTCTTGATATTGTTTTGGTGAGATTCTTAAAAGGCTTCATCTTGTAA

Network for GWHGAAZE005252

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05994.12	FragX_IP	1	244	4.80E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05749	CYFIP	RNA transport	map03013
K05749	CYFIP	Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.447
	SRR3591706	second leaf	18.276
	SRR3591707	mature leaf	14.684
	SRR3591708	Shoot apex	22.864
	SRR3591709	Stem	30.484
	SRR3591710	White floral bud	18.036
	SRR3591711	White flower	16.937
	SRR3591712	Green floral bud	29.677
	SRR3591713	Yellow flower	10.561
SRP173429	SRR8316895	Juvenile bud stage	17.124
	SRR8316896	Juvenile bud stage	21.266
	SRR8316897	Juvenile bud stage	10.838
	SRR8316894	Third green stage	9.746
	SRR8316900	Third green stage	29.650
	SRR8316901	Third green stage	20.564
	SRR8316898	Complete white stage	4.800
	SRR8316899	Complete white stage	20.744
	SRR8316903	Complete white stage	9.695
	SRR8316902	Silver flowering stage	5.577
	SRR8316904	Silver flowering stage	9.228
	SRR8316905	Silver flowering stage	2.228
	SRR8316906	Gold flowering stage	9.502
	SRR8316907	Gold flowering stage	9.100
	SRR8316908	Gold flowering stage	6.516
SRP132670	SRR6706286	Control	5.980
	SRR6706287	Light intensity 50%	6.577
	SRR6706288	Light intensity 20%	7.519
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.855
	CNS0095593	Slightly white alabastrum(diploid) 2	14.091
	CNS0095594	Slightly white alabastrum(diploid) 3	13.127
	CNS0095595	Whole white alabastrum(diploid) 2	14.799
	CNS0095596	Whole white alabastrum(diploid) 3	13.814
	CNS0095597	Whole white alabastrum(diploid) 4	11.170
	CNS0095598	Silvery flower (diploied) 1	7.115
	CNS0095599	Silvery flower (diploied) 2	13.167
	CNS0095600	Silvery flower (diploied) 3	18.289
	CNS0095601	Golden flower (diploid) 1	11.807
	CNS0095602	Golden flower (diploid) 2	17.564
	CNS0095603	Golden flower (diploid) 3	15.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.507
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.953
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.509
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.437
	CNS0095610	Silvery flower (tetraploid) 1	13.215
	CNS0095611	Silvery flower (tetraploid) 2	16.442
	CNS0095612	Silvery flower (tetraploid) 3	14.764
	CNS0095613	Golden flower (tetraploid) 1	6.136
	CNS0095614	Golden flower (tetraploid) 2	11.609
	CNS0095615	Golden flower (tetraploid) 3	12.047
CRA001975	CRR073297	Stem 1	7.901
	CRR073298	Stem 2	11.057
	CRR073299	Stem 3	6.022
	CRR073300	Leaf 1	11.240
	CRR073301	Leaf 2	7.715
	CRR073302	Leaf 3	5.827
	CRR073303	Juvenile bud 1	5.883
	CRR073304	Juvenile bud 2	4.869
	CRR073305	Juvenile bud 3	7.256
	CRR073306	Third green 1	1.219
	CRR073307	Third green 2	1.000
	CRR073308	Third green 3	2.291
	CRR073309	Second white 1	2.437
	CRR073310	Second white 2	3.525
	CRR073311	Second white 3	4.000
	CRR073312	Silver flowering 1	4.375
	CRR073313	Silver flowering 2	5.771
	CRR073314	Silver flowering 3	3.360
	CRR073315	Gold flowering 1	4.183
	CRR073316	Gold flowering 2	3.983
	CRR073317	Gold flowering 3	2.728
	CRR073318	Tawny withering 1	6.055
	CRR073319	Tawny withering 2	8.295
	CRR073320	Tawny withering 3	10.373