Detail information of GWHGAAZE005212


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011091457.10PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Sesamum indicum]
Swissprottr|Q5QIT3|2AB2B_ARATH0Serine/threonine protein phosphatase 2A regulatory subunit B''beta
trEMBLtr|W9RQP0|W9RQP0_9ROSA0Uncharacterized protein {ECO:0000313|EMBL:EXB93159.1}
TAIR10AT5G28850.20Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene43825564393782+
GWHAAZE00000002mRNA43825564393782+
GWHAAZE00000002exon43825564382705+
GWHAAZE00000002exon43837234383965+
GWHAAZE00000002exon43841144384219+
GWHAAZE00000002exon43843354384434+
GWHAAZE00000002exon43859954386100+
GWHAAZE00000002exon43864494386539+
GWHAAZE00000002exon43893264389467+
GWHAAZE00000002exon43907534390900+
GWHAAZE00000002exon43910354391144+
GWHAAZE00000002exon43919364392092+
GWHAAZE00000002exon43924944392595+
GWHAAZE00000002exon43933834393508+
GWHAAZE00000002exon43936424393782+
GWHAAZE00000002CDS43825564382705+
GWHAAZE00000002CDS43837234383965+
GWHAAZE00000002CDS43841144384219+
GWHAAZE00000002CDS43843354384434+
GWHAAZE00000002CDS43859954386100+
GWHAAZE00000002CDS43864494386539+
GWHAAZE00000002CDS43893264389467+
GWHAAZE00000002CDS43907534390900+
GWHAAZE00000002CDS43910354391144+
GWHAAZE00000002CDS43919364392092+
GWHAAZE00000002CDS43924944392595+
GWHAAZE00000002CDS43933834393508+
GWHAAZE00000002CDS43936424393782+
Transcript Sequence

Network for GWHGAAZE005212

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17958.2EF-hand_132163052.20E-33
PF13499.7EF-hand_73204203.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11583PPP2R3 mRNA surveillance pathway map03015
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.946
SRR3591706second leaf23.677
SRR3591707mature leaf24.495
SRR3591708Shoot apex32.743
SRR3591709Stem33.398
SRR3591710White floral bud39.110
SRR3591711White flower37.775
SRR3591712Green floral bud51.119
SRR3591713Yellow flower43.503
SRP173429 SRR8316895Juvenile bud stage 27.226
SRR8316896Juvenile bud stage 42.178
SRR8316897Juvenile bud stage 22.499
SRR8316894Third green stage 19.465
SRR8316900Third green stage 55.539
SRR8316901Third green stage 50.417
SRR8316898Complete white stage 19.456
SRR8316899Complete white stage 43.517
SRR8316903Complete white stage 30.238
SRR8316902Silver flowering stage16.337
SRR8316904Silver flowering stage28.800
SRR8316905Silver flowering stage12.530
SRR8316906Gold flowering stage 39.972
SRR8316907Gold flowering stage 34.613
SRR8316908Gold flowering stage 42.076
SRP132670SRR6706286Control29.122
SRR6706287Light intensity 50%31.797
SRR6706288Light intensity 20%33.677
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.589
CNS0095593Slightly white alabastrum(diploid) 224.416
CNS0095594Slightly white alabastrum(diploid) 326.802
CNS0095595Whole white alabastrum(diploid) 225.754
CNS0095596Whole white alabastrum(diploid) 328.826
CNS0095597Whole white alabastrum(diploid) 428.508
CNS0095598Silvery flower (diploied) 121.092
CNS0095599Silvery flower (diploied) 219.544
CNS0095600Silvery flower (diploied) 341.556
CNS0095601Golden flower (diploid) 117.192
CNS0095602Golden flower (diploid) 242.273
CNS0095603Golden flower (diploid) 341.280
CNS0095604Slightly white alabastrum(tetraploid) 147.789
CNS0095605Slightly white alabastrum(tetraploid) 237.997
CNS0095606Slightly white alabastrum(tetraploid) 345.970
CNS0095607Whole white alabastrum(tetraploid) 135.660
CNS0095608Whole white alabastrum(tetraploid) 238.650
CNS0095609Whole white alabastrum(tetraploid) 359.324
CNS0095610Silvery flower (tetraploid) 141.297
CNS0095611Silvery flower (tetraploid) 241.434
CNS0095612Silvery flower (tetraploid) 345.749
CNS0095613Golden flower (tetraploid) 127.715
CNS0095614Golden flower (tetraploid) 240.772
CNS0095615Golden flower (tetraploid) 352.220
CRA001975CRR073297Stem 130.815
CRR073298Stem 229.655
CRR073299Stem 328.472
CRR073300Leaf 134.345
CRR073301Leaf 231.583
CRR073302Leaf 329.848
CRR073303Juvenile bud 126.658
CRR073304Juvenile bud 227.870
CRR073305Juvenile bud 328.818
CRR073306Third green 117.935
CRR073307Third green 218.276
CRR073308Third green 320.277
CRR073309Second white 121.595
CRR073310Second white 222.344
CRR073311Second white 325.255
CRR073312Silver flowering 122.079
CRR073313Silver flowering 222.154
CRR073314Silver flowering 318.679
CRR073315Gold flowering 112.300
CRR073316Gold flowering 220.059
CRR073317Gold flowering 317.313
CRR073318Tawny withering 126.871
CRR073319Tawny withering 220.535
CRR073320Tawny withering 322.327