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Detail information of GWHGAAZE005212
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011091457.1
0
PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Sesamum indicum]
Swissprot
tr|Q5QIT3|2AB2B_ARATH
0
Serine/threonine protein phosphatase 2A regulatory subunit B''beta
trEMBL
tr|W9RQP0|W9RQP0_9ROSA
0
Uncharacterized protein {ECO:0000313|EMBL:EXB93159.1}
TAIR10
AT5G28850.2
0
Calcium-binding EF-hand family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
4382556
4393782
+
GWHAAZE00000002
mRNA
4382556
4393782
+
GWHAAZE00000002
exon
4382556
4382705
+
GWHAAZE00000002
exon
4383723
4383965
+
GWHAAZE00000002
exon
4384114
4384219
+
GWHAAZE00000002
exon
4384335
4384434
+
GWHAAZE00000002
exon
4385995
4386100
+
GWHAAZE00000002
exon
4386449
4386539
+
GWHAAZE00000002
exon
4389326
4389467
+
GWHAAZE00000002
exon
4390753
4390900
+
GWHAAZE00000002
exon
4391035
4391144
+
GWHAAZE00000002
exon
4391936
4392092
+
GWHAAZE00000002
exon
4392494
4392595
+
GWHAAZE00000002
exon
4393383
4393508
+
GWHAAZE00000002
exon
4393642
4393782
+
GWHAAZE00000002
CDS
4382556
4382705
+
GWHAAZE00000002
CDS
4383723
4383965
+
GWHAAZE00000002
CDS
4384114
4384219
+
GWHAAZE00000002
CDS
4384335
4384434
+
GWHAAZE00000002
CDS
4385995
4386100
+
GWHAAZE00000002
CDS
4386449
4386539
+
GWHAAZE00000002
CDS
4389326
4389467
+
GWHAAZE00000002
CDS
4390753
4390900
+
GWHAAZE00000002
CDS
4391035
4391144
+
GWHAAZE00000002
CDS
4391936
4392092
+
GWHAAZE00000002
CDS
4392494
4392595
+
GWHAAZE00000002
CDS
4393383
4393508
+
GWHAAZE00000002
CDS
4393642
4393782
+
Transcript Sequence
>GWHTAAZE005218 ATGGATATGGATTTCAATGGAGATGTTGGCTGTCTCGATGCCGAATTGTTGCAGCTTACGGAGGTATCTCCTCTCGCCATTAAATCAAATCCTTACGTTGCCGAGAAGCTGTTTGAGCAATGGCTTTCGCTTCCTGATACCTCTCCACTGGTAAAGTCTTTGCTTAACAATGCCAAGGCAGGTGTTCCTTTGAATGTCCCTGGTTCATCTTCGAGCCCAAATGCTGCTTCAAGCAATTCATTACCTTCCATGTTTCCTGCTGGCAGTGCACCTCCACTTTCACCACGGAGTTCATCTGGTTCTCCTCGGATTATGAAACAGAGGGCAGGACCTTCTGTTTTAGGATCCCCTTTAAAATTAGTGAGCGAGCCAGCTAAAGAGTTGATCCCGCAGTTCTACTTTCAAAATGGGCGACCAGCTCCAAACGAACTAAAAGAACGATGTTTGTTTAGAATTAACCAGTTTTTTTATGGTCACATGGATGGACTGCAAATACATGAATTTAAACCAGTAACTAAGGAAATTTGCAAGCTGCCATCATTCTTCTCCACTGCTCTCTTTAAGGAGATCGATGTTGGTTCAAGTGGCATTGTGAGCAGGGATGCATTTGTTGAATACTGGGTCAATGGCAACATGCTGACGAAGGATACTGCAACCCAAATATTTACAGTGTTAAAGCAGCCAGATCTTAAATACCTCACTCAGGATGACTTCAAACCTGTGCTTCGAGAACTTTTGGCAACTCACCCAGGGTTGGAATTCTTATCAAGCACACCTGAATTTCAAGAAAGATACGCTGAAACTGTAATATACAGAATATTTTACTATGTGAATAGAGCGGGAAATGGTCGTCTTACCCTCAGGGAGCTGAAACGTGGCAACTTAATTGCTGCAATGCAGCATGCAGATGAAGAAGAAGATATTAATAAAGTTTTGAGGTACTTCTCTTATGAACACTTTTATGTGATATATTGCAAGTTTTGGGAGCTGGATACTGATCACGATTTCTTGATCGATAAGGAGAACCTTATTAGATATGGTAACCATGCTCTTACATACAGGATTGTTGATAGAATATTTTCTCAGGTTCCAAGAAAGTTTACCAGTAAGATTGAAGGAAAGATGGGATATGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCTGAACCTAGTCTTGAGTACTGGTTCAAATGCATAGATTTGGATGGAAACGGTGTTCTGACAAGGAATGAAATGCAATTCTTTTATGAGGAGCAGTTGCATCGAATGGAATGCATGGCTCAAGAACCTGTGCTTTTTGAAGATATTTTGTGTCAGATTATTGACATGATTAAACCAGAGGGGGACACCGAGTACTTTTCATTTAGGCTAATGGTGGGTACATTTTTAGATTACCGTATCCCTGACATCTTGCGCTCTGATGATTCTTTTGATAACACTAATAATGAGAGCTATATTTTACTACGTGACTTGAAAGGTAGCAGACTTTCGGGCAGCGTTTTCAACATCCTCTTTAACCTTAACAAGTTTATGGCCTTTGAAACTCGTGATCCATTTCTAATACGTCAGGAGCGAGAGAATCCAACATGGACAGAATGGGATAGGTTTGCACACAGGGAATATATTAGGCTGTCAATGGAAGAAGATGCTGAAGATGCGTCAAATGGAAGTGCAGATGTTTGGGATGAATCTCTTGAGGCCCCCTTTTGA
Network for GWHGAAZE005212
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF17958.2
EF-hand_13
216
305
2.20E-33
PF13499.7
EF-hand_7
320
420
3.00E-19
Protein Sequence
>GWHPAAZE005215 MDMDFNGDVGCLDAELLQLTEVSPLAIKSNPYVAEKLFEQWLSLPDTSPLVKSLLNNAKAGVPLNVPGSSSSPNAASSNSLPSMFPAGSAPPLSPRSSSGSPRIMKQRAGPSVLGSPLKLVSEPAKELIPQFYFQNGRPAPNELKERCLFRINQFFYGHMDGLQIHEFKPVTKEICKLPSFFSTALFKEIDVGSSGIVSRDAFVEYWVNGNMLTKDTATQIFTVLKQPDLKYLTQDDFKPVLRELLATHPGLEFLSSTPEFQERYAETVIYRIFYYVNRAGNGRLTLRELKRGNLIAAMQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKIEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVLTRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIKPEGDTEYFSFRLMVGTFLDYRIPDILRSDDSFDNTNNESYILLRDLKGSRLSGSVFNILFNLNKFMAFETRDPFLIRQERENPTWTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K11583
PPP2R3
mRNA surveillance pathway
map03015
Sphingolipid signaling pathway
map04071
PI3K-Akt signaling pathway
map04151
AMPK signaling pathway
map04152
Adrenergic signaling in cardiomyocytes
map04261
Dopaminergic synapse
map04728
Gene Ontology
GO term
Ontology
Name
GO:0005509
molecular_function
calcium ion binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
44.946
SRR3591706
second leaf
23.677
SRR3591707
mature leaf
24.495
SRR3591708
Shoot apex
32.743
SRR3591709
Stem
33.398
SRR3591710
White floral bud
39.110
SRR3591711
White flower
37.775
SRR3591712
Green floral bud
51.119
SRR3591713
Yellow flower
43.503
SRP173429
SRR8316895
Juvenile bud stage
27.226
SRR8316896
Juvenile bud stage
42.178
SRR8316897
Juvenile bud stage
22.499
SRR8316894
Third green stage
19.465
SRR8316900
Third green stage
55.539
SRR8316901
Third green stage
50.417
SRR8316898
Complete white stage
19.456
SRR8316899
Complete white stage
43.517
SRR8316903
Complete white stage
30.238
SRR8316902
Silver flowering stage
16.337
SRR8316904
Silver flowering stage
28.800
SRR8316905
Silver flowering stage
12.530
SRR8316906
Gold flowering stage
39.972
SRR8316907
Gold flowering stage
34.613
SRR8316908
Gold flowering stage
42.076
SRP132670
SRR6706286
Control
29.122
SRR6706287
Light intensity 50%
31.797
SRR6706288
Light intensity 20%
33.677
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
25.589
CNS0095593
Slightly white alabastrum(diploid) 2
24.416
CNS0095594
Slightly white alabastrum(diploid) 3
26.802
CNS0095595
Whole white alabastrum(diploid) 2
25.754
CNS0095596
Whole white alabastrum(diploid) 3
28.826
CNS0095597
Whole white alabastrum(diploid) 4
28.508
CNS0095598
Silvery flower (diploied) 1
21.092
CNS0095599
Silvery flower (diploied) 2
19.544
CNS0095600
Silvery flower (diploied) 3
41.556
CNS0095601
Golden flower (diploid) 1
17.192
CNS0095602
Golden flower (diploid) 2
42.273
CNS0095603
Golden flower (diploid) 3
41.280
CNS0095604
Slightly white alabastrum(tetraploid) 1
47.789
CNS0095605
Slightly white alabastrum(tetraploid) 2
37.997
CNS0095606
Slightly white alabastrum(tetraploid) 3
45.970
CNS0095607
Whole white alabastrum(tetraploid) 1
35.660
CNS0095608
Whole white alabastrum(tetraploid) 2
38.650
CNS0095609
Whole white alabastrum(tetraploid) 3
59.324
CNS0095610
Silvery flower (tetraploid) 1
41.297
CNS0095611
Silvery flower (tetraploid) 2
41.434
CNS0095612
Silvery flower (tetraploid) 3
45.749
CNS0095613
Golden flower (tetraploid) 1
27.715
CNS0095614
Golden flower (tetraploid) 2
40.772
CNS0095615
Golden flower (tetraploid) 3
52.220
CRA001975
CRR073297
Stem 1
30.815
CRR073298
Stem 2
29.655
CRR073299
Stem 3
28.472
CRR073300
Leaf 1
34.345
CRR073301
Leaf 2
31.583
CRR073302
Leaf 3
29.848
CRR073303
Juvenile bud 1
26.658
CRR073304
Juvenile bud 2
27.870
CRR073305
Juvenile bud 3
28.818
CRR073306
Third green 1
17.935
CRR073307
Third green 2
18.276
CRR073308
Third green 3
20.277
CRR073309
Second white 1
21.595
CRR073310
Second white 2
22.344
CRR073311
Second white 3
25.255
CRR073312
Silver flowering 1
22.079
CRR073313
Silver flowering 2
22.154
CRR073314
Silver flowering 3
18.679
CRR073315
Gold flowering 1
12.300
CRR073316
Gold flowering 2
20.059
CRR073317
Gold flowering 3
17.313
CRR073318
Tawny withering 1
26.871
CRR073319
Tawny withering 2
20.535
CRR073320
Tawny withering 3
22.327