Detail information of GWHGAAZE005202


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266063.20PREDICTED: putative lysine-specific demethylase JMJ16 [Vitis vinifera]
Swissprottr|C0SUT9|JMJ16_ARATH0Putative lysine-specific demethylase JMJ16
trEMBLtr|F6H616|F6H616_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47655.1}
TAIR10AT1G08620.20Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene42058094212357-
GWHAAZE00000002mRNA42058094212357-
GWHAAZE00000002exon42058094206123-
GWHAAZE00000002exon42067114206908-
GWHAAZE00000002exon42071624207265-
GWHAAZE00000002exon42073584208669-
GWHAAZE00000002exon42092874209655-
GWHAAZE00000002exon42097514209912-
GWHAAZE00000002exon42101064210330-
GWHAAZE00000002exon42104724210981-
GWHAAZE00000002exon42111764211253-
GWHAAZE00000002exon42116454211716-
GWHAAZE00000002exon42120674212357-
GWHAAZE00000002CDS42120674212357-
GWHAAZE00000002CDS42116454211716-
GWHAAZE00000002CDS42111764211253-
GWHAAZE00000002CDS42104724210981-
GWHAAZE00000002CDS42101064210330-
GWHAAZE00000002CDS42097514209912-
GWHAAZE00000002CDS42092874209655-
GWHAAZE00000002CDS42073584208669-
GWHAAZE00000002CDS42071624207265-
GWHAAZE00000002CDS42067114206908-
GWHAAZE00000002CDS42058094206123-
Transcript Sequence

Network for GWHGAAZE005202

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02375.18JmjN1401734.00E-17
PF02373.23JmjC3804961.20E-45
PF02928.17zf-C5HC26036544.80E-12
PF05964.15FYRN99110302.60E-08
PF05965.15FYRC103711211.20E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.812
SRR3591706second leaf12.601
SRR3591707mature leaf14.193
SRR3591708Shoot apex15.240
SRR3591709Stem27.761
SRR3591710White floral bud36.494
SRR3591711White flower29.863
SRR3591712Green floral bud22.368
SRR3591713Yellow flower30.099
SRP173429 SRR8316895Juvenile bud stage 11.761
SRR8316896Juvenile bud stage 16.565
SRR8316897Juvenile bud stage 7.996
SRR8316894Third green stage 7.518
SRR8316900Third green stage 19.134
SRR8316901Third green stage 19.321
SRR8316898Complete white stage 7.286
SRR8316899Complete white stage 22.280
SRR8316903Complete white stage 16.497
SRR8316902Silver flowering stage7.425
SRR8316904Silver flowering stage12.395
SRR8316905Silver flowering stage4.906
SRR8316906Gold flowering stage 21.664
SRR8316907Gold flowering stage 19.765
SRR8316908Gold flowering stage 18.300
SRP132670SRR6706286Control17.087
SRR6706287Light intensity 50%18.133
SRR6706288Light intensity 20%17.703
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.891
CNS0095593Slightly white alabastrum(diploid) 28.240
CNS0095594Slightly white alabastrum(diploid) 38.938
CNS0095595Whole white alabastrum(diploid) 210.324
CNS0095596Whole white alabastrum(diploid) 38.042
CNS0095597Whole white alabastrum(diploid) 410.572
CNS0095598Silvery flower (diploied) 116.566
CNS0095599Silvery flower (diploied) 213.819
CNS0095600Silvery flower (diploied) 325.312
CNS0095601Golden flower (diploid) 112.803
CNS0095602Golden flower (diploid) 228.618
CNS0095603Golden flower (diploid) 326.600
CNS0095604Slightly white alabastrum(tetraploid) 114.085
CNS0095605Slightly white alabastrum(tetraploid) 211.118
CNS0095606Slightly white alabastrum(tetraploid) 321.356
CNS0095607Whole white alabastrum(tetraploid) 111.421
CNS0095608Whole white alabastrum(tetraploid) 28.959
CNS0095609Whole white alabastrum(tetraploid) 317.760
CNS0095610Silvery flower (tetraploid) 125.253
CNS0095611Silvery flower (tetraploid) 223.299
CNS0095612Silvery flower (tetraploid) 331.369
CNS0095613Golden flower (tetraploid) 116.111
CNS0095614Golden flower (tetraploid) 224.159
CNS0095615Golden flower (tetraploid) 327.597
CRA001975CRR073297Stem 114.189
CRR073298Stem 213.607
CRR073299Stem 38.672
CRR073300Leaf 116.262
CRR073301Leaf 214.298
CRR073302Leaf 39.853
CRR073303Juvenile bud 19.090
CRR073304Juvenile bud 29.029
CRR073305Juvenile bud 317.292
CRR073306Third green 17.557
CRR073307Third green 25.711
CRR073308Third green 37.511
CRR073309Second white 15.903
CRR073310Second white 29.900
CRR073311Second white 311.022
CRR073312Silver flowering 19.075
CRR073313Silver flowering 210.011
CRR073314Silver flowering 37.687
CRR073315Gold flowering 17.110
CRR073316Gold flowering 212.071
CRR073317Gold flowering 35.373
CRR073318Tawny withering 117.515
CRR073319Tawny withering 214.843
CRR073320Tawny withering 316.694