Gene detail

Detail information of GWHGAAZE005186

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAB71853.1	4.6855E-164	phosphoenolpyruvate carboxylase kinase [Flaveria trinervia]
Swissprot	tr\|Q9SPK4\|PPCK1_ARATH	7E-108	Phosphoenolpyruvate carboxylase kinase 1
trEMBL	tr\|Q8W5R4\|Q8W5R4_FLATR	2E-164	Phosphoenolpyruvate carboxylase kinase {ECO:0000313\|EMBL:BAB71853.1}
TAIR10	AT1G08650.1	3E-87	phosphoenolpyruvate carboxylase kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	4039822	4040917	-
GWHAAZE00000002	mRNA	4039822	4040917	-
GWHAAZE00000002	exon	4040134	4040917	-
GWHAAZE00000002	exon	4039822	4039877	-
GWHAAZE00000002	CDS	4040134	4040917	-
GWHAAZE00000002	CDS	4039822	4039877	-

Transcript Sequence
>GWHTAAZE005192 ATGTGCGAGAGCTTCAAAAGCGATTATCAGTTGTGCGAAGAGATCGGCCGCGGACGATTCGGCGTCGTCTACCGGTGTTTCTCTCCAGTATCCGGCGAATCCTTCGCCTGCAAATCCATCGACAAGCGTCTTCTATCCGACCCCACTGATCGCGAGTGCCTTGAAAAAGAGCCTAAAATCCTTCAGCTTCTAGCCGGAAACGCCAACGTTCTCCAAATTTACAGAGTCTACGAAGACGAAAATTATCTCCATATAGTCACCGATCTTTGTGACGCTCCTGATCTATTTGATCGGCTTTCCAAAGGTACTTTTTCTGAATCTGAAGCGGCGTTTATCTTCAAATCGTTAATAGGCGCCCTAGCTTGTTGTCACCGTAGTGGTATTGCTCATCGAGATATAAAGCCGGACAATATATTGTTCGATTCTCGAAATAGGTTGAAATTAGCTGATTTTGGATCTGCGGAGTGGTTTGCTGTTAACGATCGGCGGACGATGACGGGGATCGTCGGAACGCCGTACTACGTTGCGCCGGAGGTGTTGTCCGGGAGGGAGTACAATGAGAAGGTTGATGTTTGGAGCGCTGGAGTCATTTTGTATATAATGTTGGCCGGTGTTCCTCCGTTCTATGGAGATTCTGCTGCGGAGACCTTCGAGGCGGTGATGCGAGGGAATCTCCGATTTCCGACGAGAATATTCCGGTCTGTTTCTCCTGAAGCTAAGGATCTGTTGAGGAAGATGATCTGCAAGGATGTTTCAAGGCGGCTATCAGCAGAGCAAATTCTGAGACATCCATGGGTAACAAGTGGAGGAGAAGCTCGATCGGTGCTCGATCTGACTTGA

Network for GWHGAAZE005186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	9	266	6.30E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.011
	SRR3591706	second leaf	46.664
	SRR3591707	mature leaf	21.855
	SRR3591708	Shoot apex	37.027
	SRR3591709	Stem	148.408
	SRR3591710	White floral bud	34.138
	SRR3591711	White flower	25.409
	SRR3591712	Green floral bud	65.014
	SRR3591713	Yellow flower	9.290
SRP173429	SRR8316895	Juvenile bud stage	12.768
	SRR8316896	Juvenile bud stage	21.031
	SRR8316897	Juvenile bud stage	8.683
	SRR8316894	Third green stage	16.175
	SRR8316900	Third green stage	45.317
	SRR8316901	Third green stage	40.162
	SRR8316898	Complete white stage	22.802
	SRR8316899	Complete white stage	61.416
	SRR8316903	Complete white stage	29.729
	SRR8316902	Silver flowering stage	6.694
	SRR8316904	Silver flowering stage	10.683
	SRR8316905	Silver flowering stage	3.558
	SRR8316906	Gold flowering stage	11.204
	SRR8316907	Gold flowering stage	14.558
	SRR8316908	Gold flowering stage	22.892
SRP132670	SRR6706286	Control	29.391
	SRR6706287	Light intensity 50%	32.301
	SRR6706288	Light intensity 20%	33.306
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.036
	CNS0095593	Slightly white alabastrum(diploid) 2	65.638
	CNS0095594	Slightly white alabastrum(diploid) 3	76.501
	CNS0095595	Whole white alabastrum(diploid) 2	55.151
	CNS0095596	Whole white alabastrum(diploid) 3	38.605
	CNS0095597	Whole white alabastrum(diploid) 4	46.652
	CNS0095598	Silvery flower (diploied) 1	25.778
	CNS0095599	Silvery flower (diploied) 2	17.048
	CNS0095600	Silvery flower (diploied) 3	13.846
	CNS0095601	Golden flower (diploid) 1	21.741
	CNS0095602	Golden flower (diploid) 2	20.053
	CNS0095603	Golden flower (diploid) 3	18.984
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.859
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.579
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.335
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.712
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.666
	CNS0095610	Silvery flower (tetraploid) 1	16.154
	CNS0095611	Silvery flower (tetraploid) 2	20.937
	CNS0095612	Silvery flower (tetraploid) 3	25.205
	CNS0095613	Golden flower (tetraploid) 1	6.089
	CNS0095614	Golden flower (tetraploid) 2	17.935
	CNS0095615	Golden flower (tetraploid) 3	9.001
CRA001975	CRR073297	Stem 1	114.961
	CRR073298	Stem 2	116.250
	CRR073299	Stem 3	135.352
	CRR073300	Leaf 1	154.080
	CRR073301	Leaf 2	169.727
	CRR073302	Leaf 3	165.579
	CRR073303	Juvenile bud 1	210.424
	CRR073304	Juvenile bud 2	173.723
	CRR073305	Juvenile bud 3	170.356
	CRR073306	Third green 1	203.872
	CRR073307	Third green 2	175.596
	CRR073308	Third green 3	148.439
	CRR073309	Second white 1	88.170
	CRR073310	Second white 2	80.005
	CRR073311	Second white 3	40.245
	CRR073312	Silver flowering 1	39.616
	CRR073313	Silver flowering 2	36.331
	CRR073314	Silver flowering 3	30.981
	CRR073315	Gold flowering 1	34.414
	CRR073316	Gold flowering 2	36.442
	CRR073317	Gold flowering 3	27.704
	CRR073318	Tawny withering 1	143.005
	CRR073319	Tawny withering 2	113.229
	CRR073320	Tawny withering 3	107.382