Gene detail

Detail information of GWHGAAZE005177

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002270757.1	PREDICTED: protein EIN4 [Vitis vinifera]
Swissprot	tr\|Q9ZTP3\|EIN4_ARATH	Protein EIN4
trEMBL	tr\|F6HVI4\|F6HVI4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58697.1}
TAIR10	AT3G04580.2	Signal transduction histidine kinase, hybrid-type, ethylene sensor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3921110	3922879	+
GWHAAZE00000002	mRNA	3921110	3922879	+
GWHAAZE00000002	exon	3921110	3922879	+
GWHAAZE00000002	CDS	3921110	3922879	+

Transcript Sequence
>GWHTAAZE005183 ATGTTGAAATCTTTACTTCTTAAGTTGTTGGTAGCTTCATTACTAATCTCCGTTTCGGCCGATGATGATGGATTCACCCAATGTCACTGTGATGACGAGGGTTTTTGGAGTATTCATAGTATTTTAGAGTGCCAAAAAGTGAGTGATTTCTTGATCGCAGTAGCCTATTTTTCAATCCCCATTGAGTTGCTCTACTTTCTAAGCTGTTCCAATGTGCCATTCAAATGGGTACTACTACAATTTATTGCGTTTATAGTCCTTTGTGGATTGACCCATTTACTCAATGGGTGGACTTATTATGGTCGTCACTCATTCCAGTTGATGATGGCCCTCACCATTGCCAAATTGCTCACCGCCCTCGTTTCTTGTGCCACTGCAATCACCCTTTTGACTCTAATCCCTCTTCTTCTCAAAGTCAAAGTCAGAGAGATCTTCTTGAAACAAAACGTGTTGGAGTTAGACCAAGAGGTTGGGATGATGAAGAAGCAGAAAGAAGCTGGGTGGCATGTTCGAATGCTGACCCAAGAGATAAGAAAGTCTCTCGATAAGCACACAATTCTTTACACCACTCTGGTTGAGCTTTCCAATACCTTAGATCTACACAATTGCGCAGTTTGGATGCTTAATGCGAAAAACACTGAGATGAACCTTACGCATGAGCTGCGATCGAGTTCTTCGAAGAATTACCGTCCTTCACTTCCCATAAACGACCCGGATGTATTAGAGATAACAAAGAACAAGGGGGTGAGGATTTTGGGGTCACATTCAAGACTCGGGATTGTGAGCAGTGGAGGGTCCGGTGAGTCGGGTGCTGTGGCGGCAATACGGATGCCGATGCTTCGTGTTTCAAATTTCAAGGGGGGAACGCCAGAGTTGGTTGATACTTGTTATGCTATATTGGTTTTGGTTCTTCCCGCTAACGATACAGATTGGAGCTATGACGAGATGGAGATAGTGGAAGTGGTAGCTGATCAGGTGGCTGTGGCTCTCTCTCATGCTGCAGTTCTTGAGGAGTCCCAATTGATGAGAGAGAAACTTGGAGAGCAAAACCGTATGCTGCAACAGGCCAAGGAAAACGCGATGATGGCAAGCCAAGCGAGGAACTCTTTCCAGAAGGTGATGAGCCATGGGATGAGAAGGCCAATGCACTCGATTTTGGGCTTACTTTCTATGTTTCAAGATGATAGTATGAGATCCGAGCAGAGGATTATTGTCGAGACAATCTTAAAAACGAGCAGTGTGCTCTCAACATTGATAAATGATGTAATGGAGATATCGACCAAAGATGCAGGGAAATTCCCGTTACAAATGAATCCGTTTGGGTTACATTCAATGGTTAAGGAGGCTTCTTGTCTTGTAAAGTGCTTGTGCGTTTATAAGGGATTTAGTTTTTCTATAGATGTACCAAGCAATTTGCCTAACCAGGTGATGGGTGATGAGAGAAGGACTTTTCAGGTTCTTTTTCATATGGTTGGGCATCTATTGAATGTTAGCGAGGGAGGGGTATCTGTCATATTTAGGGTTTCTTCGGAGAATGGTGGAATTGAGGCGAGAAATGATAAAAATTGGGGAAATAGAAGAACGGGCACTGCAACAGATGAATATGTGAATGTGAAGTTTGAAATGGGAATTAGTGATGGAGGATCTCAATCAGATGGCTCGATTTCTACCATACATTTTGGTGGTAGGAGGCACAACGGCAATGAAATTAAGGATGGTCTTAGCTTCAGCATGTGTAAAAAGCTTGTGCAGGTGAGAATCAATACCTAA

Network for GWHGAAZE005177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01590.27	GAF	184	330	7.30E-11
PF00512.26	HisKA	367	431	5.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14509	ETR, ERS	MAPK signaling pathway - plant	map04016
K14509	ETR, ERS	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.718
	SRR3591706	second leaf	13.625
	SRR3591707	mature leaf	22.373
	SRR3591708	Shoot apex	15.697
	SRR3591709	Stem	24.507
	SRR3591710	White floral bud	28.661
	SRR3591711	White flower	36.339
	SRR3591712	Green floral bud	14.780
	SRR3591713	Yellow flower	24.361
SRP173429	SRR8316895	Juvenile bud stage	8.547
	SRR8316896	Juvenile bud stage	9.785
	SRR8316897	Juvenile bud stage	4.862
	SRR8316894	Third green stage	5.262
	SRR8316900	Third green stage	12.390
	SRR8316901	Third green stage	12.987
	SRR8316898	Complete white stage	8.851
	SRR8316899	Complete white stage	19.515
	SRR8316903	Complete white stage	17.207
	SRR8316902	Silver flowering stage	9.556
	SRR8316904	Silver flowering stage	16.294
	SRR8316905	Silver flowering stage	8.370
	SRR8316906	Gold flowering stage	19.080
	SRR8316907	Gold flowering stage	18.324
	SRR8316908	Gold flowering stage	23.987
SRP132670	SRR6706286	Control	12.667
	SRR6706287	Light intensity 50%	13.743
	SRR6706288	Light intensity 20%	13.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.791
	CNS0095593	Slightly white alabastrum(diploid) 2	8.592
	CNS0095594	Slightly white alabastrum(diploid) 3	7.384
	CNS0095595	Whole white alabastrum(diploid) 2	6.624
	CNS0095596	Whole white alabastrum(diploid) 3	4.082
	CNS0095597	Whole white alabastrum(diploid) 4	7.552
	CNS0095598	Silvery flower (diploied) 1	17.486
	CNS0095599	Silvery flower (diploied) 2	9.329
	CNS0095600	Silvery flower (diploied) 3	28.251
	CNS0095601	Golden flower (diploid) 1	11.519
	CNS0095602	Golden flower (diploid) 2	23.673
	CNS0095603	Golden flower (diploid) 3	23.205
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.037
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.499
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.850
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.885
	CNS0095610	Silvery flower (tetraploid) 1	36.331
	CNS0095611	Silvery flower (tetraploid) 2	31.059
	CNS0095612	Silvery flower (tetraploid) 3	28.452
	CNS0095613	Golden flower (tetraploid) 1	17.436
	CNS0095614	Golden flower (tetraploid) 2	32.214
	CNS0095615	Golden flower (tetraploid) 3	32.059
CRA001975	CRR073297	Stem 1	13.151
	CRR073298	Stem 2	11.467
	CRR073299	Stem 3	7.746
	CRR073300	Leaf 1	15.410
	CRR073301	Leaf 2	13.059
	CRR073302	Leaf 3	7.455
	CRR073303	Juvenile bud 1	9.084
	CRR073304	Juvenile bud 2	11.516
	CRR073305	Juvenile bud 3	11.522
	CRR073306	Third green 1	18.242
	CRR073307	Third green 2	11.851
	CRR073308	Third green 3	19.079
	CRR073309	Second white 1	13.727
	CRR073310	Second white 2	20.904
	CRR073311	Second white 3	23.299
	CRR073312	Silver flowering 1	18.400
	CRR073313	Silver flowering 2	13.280
	CRR073314	Silver flowering 3	13.543
	CRR073315	Gold flowering 1	6.997
	CRR073316	Gold flowering 2	12.722
	CRR073317	Gold flowering 3	8.912
	CRR073318	Tawny withering 1	9.211
	CRR073319	Tawny withering 2	6.996
	CRR073320	Tawny withering 3	5.773