Detail information of GWHGAAZE005168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002514436.10calcium-dependent protein kinase, putative [Ricinus communis]
Swissprottr|Q06850|CDPK1_ARATH0Calcium-dependent protein kinase 1
trEMBLtr|B9RL17|B9RL17_RICCO0Calcium-dependent protein kinase, putative {ECO:0000313|EMBL:EEF47932.1}
TAIR10AT5G04870.10calcium dependent protein kinase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene37141093722156-
GWHAAZE00000002mRNA37141093722156-
GWHAAZE00000002exon37213883722156-
GWHAAZE00000002exon37210743721171-
GWHAAZE00000002exon37207403720866-
GWHAAZE00000002exon37196493719839-
GWHAAZE00000002exon37193263719493-
GWHAAZE00000002exon37148743715098-
GWHAAZE00000002exon37141093714234-
GWHAAZE00000002CDS37213883722156-
GWHAAZE00000002CDS37210743721171-
GWHAAZE00000002CDS37207403720866-
GWHAAZE00000002CDS37196493719839-
GWHAAZE00000002CDS37193263719493-
GWHAAZE00000002CDS37148743715098-
GWHAAZE00000002CDS37141093714234-
Transcript Sequence

Network for GWHGAAZE005168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1033318.90E-57
PF13499.7EF-hand_74094696.20E-11
PF13499.7EF-hand_74795395.60E-14
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCAMK_CDPK

KEGG pathway

KO Enzyme pathway mapID
K13412CPK Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005509molecular_functioncalcium ion binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf49.517
SRR3591706second leaf26.650
SRR3591707mature leaf26.225
SRR3591708Shoot apex34.336
SRR3591709Stem44.312
SRR3591710White floral bud31.277
SRR3591711White flower34.134
SRR3591712Green floral bud32.855
SRR3591713Yellow flower30.477
SRP173429 SRR8316895Juvenile bud stage 20.340
SRR8316896Juvenile bud stage 21.255
SRR8316897Juvenile bud stage 9.071
SRR8316894Third green stage 8.316
SRR8316900Third green stage 16.697
SRR8316901Third green stage 17.662
SRR8316898Complete white stage 7.390
SRR8316899Complete white stage 25.582
SRR8316903Complete white stage 9.533
SRR8316902Silver flowering stage6.779
SRR8316904Silver flowering stage11.406
SRR8316905Silver flowering stage5.551
SRR8316906Gold flowering stage 15.026
SRR8316907Gold flowering stage 16.175
SRR8316908Gold flowering stage 21.121
SRP132670SRR6706286Control17.480
SRR6706287Light intensity 50%18.988
SRR6706288Light intensity 20%20.537
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.966
CNS0095593Slightly white alabastrum(diploid) 217.741
CNS0095594Slightly white alabastrum(diploid) 315.432
CNS0095595Whole white alabastrum(diploid) 212.100
CNS0095596Whole white alabastrum(diploid) 39.422
CNS0095597Whole white alabastrum(diploid) 411.906
CNS0095598Silvery flower (diploied) 115.200
CNS0095599Silvery flower (diploied) 213.789
CNS0095600Silvery flower (diploied) 313.494
CNS0095601Golden flower (diploid) 111.739
CNS0095602Golden flower (diploid) 213.839
CNS0095603Golden flower (diploid) 315.035
CNS0095604Slightly white alabastrum(tetraploid) 115.545
CNS0095605Slightly white alabastrum(tetraploid) 210.398
CNS0095606Slightly white alabastrum(tetraploid) 330.060
CNS0095607Whole white alabastrum(tetraploid) 18.276
CNS0095608Whole white alabastrum(tetraploid) 26.867
CNS0095609Whole white alabastrum(tetraploid) 314.593
CNS0095610Silvery flower (tetraploid) 115.224
CNS0095611Silvery flower (tetraploid) 212.257
CNS0095612Silvery flower (tetraploid) 311.687
CNS0095613Golden flower (tetraploid) 15.622
CNS0095614Golden flower (tetraploid) 213.752
CNS0095615Golden flower (tetraploid) 34.925
CRA001975CRR073297Stem 123.227
CRR073298Stem 223.333
CRR073299Stem 319.677
CRR073300Leaf 120.591
CRR073301Leaf 217.815
CRR073302Leaf 315.245
CRR073303Juvenile bud 117.683
CRR073304Juvenile bud 216.521
CRR073305Juvenile bud 317.691
CRR073306Third green 19.817
CRR073307Third green 211.244
CRR073308Third green 311.135
CRR073309Second white 17.951
CRR073310Second white 26.961
CRR073311Second white 35.326
CRR073312Silver flowering 13.457
CRR073313Silver flowering 22.345
CRR073314Silver flowering 31.892
CRR073315Gold flowering 111.818
CRR073316Gold flowering 216.834
CRR073317Gold flowering 314.802
CRR073318Tawny withering 133.956
CRR073319Tawny withering 226.137
CRR073320Tawny withering 334.424