Gene detail

Detail information of GWHGAAZE005156

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002310998.1	1.4257E-134	SNF7 family protein [Populus trichocarpa]
Swissprot	tr\|Q9SZE4\|VP322_ARATH	1E-10	Vacuolar protein sorting-associated protein 32 homolog 2
trEMBL	tr\|B9HKM9\|B9HKM9_POPTR	5E-135	SNF7 family protein {ECO:0000313\|EMBL:EEE88365.1}
TAIR10	AT3G10640.1	2E-98	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3565128	3568833	+
GWHAAZE00000002	mRNA	3565128	3568833	+
GWHAAZE00000002	exon	3565128	3565327	+
GWHAAZE00000002	exon	3566014	3566107	+
GWHAAZE00000002	exon	3566868	3566939	+
GWHAAZE00000002	exon	3567031	3567142	+
GWHAAZE00000002	exon	3567519	3567679	+
GWHAAZE00000002	exon	3568780	3568833	+
GWHAAZE00000002	CDS	3565128	3565327	+
GWHAAZE00000002	CDS	3566014	3566107	+
GWHAAZE00000002	CDS	3566868	3566939	+
GWHAAZE00000002	CDS	3567031	3567142	+
GWHAAZE00000002	CDS	3567519	3567679	+
GWHAAZE00000002	CDS	3568780	3568833	+

Transcript Sequence
>GWHTAAZE005162 TTGAACTATGGGTTGCACCTAATTGTTTTGTTTACTTGTTCTTTTCAGATCAATAAAAGAGGTGAAACCGTAGATGAAAAGATAAAAAGGCTTGATAATGAACTTGCTCGATATAAAGAACAAATCAAGAGAACTCGTCCCGGTCCAGCTCAAGAAGCTGTAAAGGCTCGAGCGACGAGGGTTCTCAAGCAAAAGAGAATGTATGAAGGACAGCGTGACATGCTTTACAATCAGACATTCAATCTAGACCAAGTTGCATTTGCTGCTGAGGGAATCAAAGATGCTCAACAAACAATGACAGCTTTAAAGTCAGCAAACAAAGAGTTGAAAGGGATGATGAAGACGGTCAAGATTCAAGACATTGATAACTTGCAAGATGAGATGATGGATCTAATGGATGTGAGCACCGAGATTCAAGAGTCTCTCGGTAGAAGCTACAGCGTCCCTGATGACATTGATGAGGAAGACCTCATGGGTGAGCTCGATGCTCTGGAAGCAGACATGGGGTTGGATACCGAGAATGATGGTGTACCTTCGTATCTTCAACTTGATAAAGAACCTGATTTTGATGCGGAACTTAACTTGCCTTCAGCACCAACTGGGCAGTCGGCAGTGCCAGCTGGCAGAGCTAACACCCAGGATGACGATGAACTTGGCTTACCTGCTGTTCCTCATGCGTCACTTCGTGGCTAG

Network for GWHGAAZE005156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	16	202	1.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12198	CHMP5, VPS60	Endocytosis	map04144
K12198	CHMP5, VPS60	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.798
	SRR3591706	second leaf	9.002
	SRR3591707	mature leaf	8.524
	SRR3591708	Shoot apex	15.169
	SRR3591709	Stem	16.600
	SRR3591710	White floral bud	10.262
	SRR3591711	White flower	9.489
	SRR3591712	Green floral bud	14.932
	SRR3591713	Yellow flower	4.548
SRP173429	SRR8316895	Juvenile bud stage	5.201
	SRR8316896	Juvenile bud stage	6.752
	SRR8316897	Juvenile bud stage	2.963
	SRR8316894	Third green stage	4.300
	SRR8316900	Third green stage	7.093
	SRR8316901	Third green stage	8.976
	SRR8316898	Complete white stage	4.094
	SRR8316899	Complete white stage	10.988
	SRR8316903	Complete white stage	5.268
	SRR8316902	Silver flowering stage	5.584
	SRR8316904	Silver flowering stage	5.081
	SRR8316905	Silver flowering stage	2.120
	SRR8316906	Gold flowering stage	11.345
	SRR8316907	Gold flowering stage	7.315
	SRR8316908	Gold flowering stage	6.278
SRP132670	SRR6706286	Control	5.310
	SRR6706287	Light intensity 50%	5.231
	SRR6706288	Light intensity 20%	5.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.302
	CNS0095593	Slightly white alabastrum(diploid) 2	8.204
	CNS0095594	Slightly white alabastrum(diploid) 3	7.282
	CNS0095595	Whole white alabastrum(diploid) 2	8.009
	CNS0095596	Whole white alabastrum(diploid) 3	6.197
	CNS0095597	Whole white alabastrum(diploid) 4	7.498
	CNS0095598	Silvery flower (diploied) 1	6.045
	CNS0095599	Silvery flower (diploied) 2	5.947
	CNS0095600	Silvery flower (diploied) 3	5.626
	CNS0095601	Golden flower (diploid) 1	4.536
	CNS0095602	Golden flower (diploid) 2	4.518
	CNS0095603	Golden flower (diploid) 3	5.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.957
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.371
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.710
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.952
	CNS0095610	Silvery flower (tetraploid) 1	3.939
	CNS0095611	Silvery flower (tetraploid) 2	4.807
	CNS0095612	Silvery flower (tetraploid) 3	4.084
	CNS0095613	Golden flower (tetraploid) 1	3.604
	CNS0095614	Golden flower (tetraploid) 2	3.490
	CNS0095615	Golden flower (tetraploid) 3	2.433
CRA001975	CRR073297	Stem 1	17.657
	CRR073298	Stem 2	13.049
	CRR073299	Stem 3	16.619
	CRR073300	Leaf 1	14.616
	CRR073301	Leaf 2	14.226
	CRR073302	Leaf 3	15.368
	CRR073303	Juvenile bud 1	16.498
	CRR073304	Juvenile bud 2	10.350
	CRR073305	Juvenile bud 3	10.589
	CRR073306	Third green 1	5.174
	CRR073307	Third green 2	6.691
	CRR073308	Third green 3	6.480
	CRR073309	Second white 1	5.903
	CRR073310	Second white 2	6.256
	CRR073311	Second white 3	3.090
	CRR073312	Silver flowering 1	4.725
	CRR073313	Silver flowering 2	4.073
	CRR073314	Silver flowering 3	2.670
	CRR073315	Gold flowering 1	16.099
	CRR073316	Gold flowering 2	23.294
	CRR073317	Gold flowering 3	13.655
	CRR073318	Tawny withering 1	20.036
	CRR073319	Tawny withering 2	15.613
	CRR073320	Tawny withering 3	14.238