Gene detail

Detail information of GWHGAAZE005143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245468.1	0	PREDICTED: ribonuclease H2 subunit A [Nelumbo nucifera]
Swissprot	tr\|Q9SEZ6\|RNH2A_ARATH	1E-167	Ribonuclease H2 subunit A
trEMBL	tr\|M5X1Z0\|M5X1Z0_PRUPE	0	Ribonuclease {ECO:0000256\|RuleBase:RU003515}
TAIR10	AT2G25100.1	2E-133	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3288421	3293261	-
GWHAAZE00000002	mRNA	3288421	3293261	-
GWHAAZE00000002	exon	3293087	3293261	-
GWHAAZE00000002	exon	3292841	3292912	-
GWHAAZE00000002	exon	3292147	3292270	-
GWHAAZE00000002	exon	3291964	3292051	-
GWHAAZE00000002	exon	3291694	3291831	-
GWHAAZE00000002	exon	3291518	3291605	-
GWHAAZE00000002	exon	3291310	3291430	-
GWHAAZE00000002	exon	3288421	3288598	-
GWHAAZE00000002	five_prime_UTR	3293169	3293261	-
GWHAAZE00000002	CDS	3293087	3293168	-
GWHAAZE00000002	CDS	3292841	3292912	-
GWHAAZE00000002	CDS	3292147	3292270	-
GWHAAZE00000002	CDS	3291964	3292051	-
GWHAAZE00000002	CDS	3291694	3291831	-
GWHAAZE00000002	CDS	3291518	3291605	-
GWHAAZE00000002	CDS	3291310	3291430	-
GWHAAZE00000002	CDS	3288421	3288598	-

Transcript Sequence
>GWHTAAZE005149 TGTTTCTGGCGGGAGCTGGAACGAGAACGAGAACGAAGAGAGAGTTTGAGAAAGAGAAGATCGGCGACGGACGCAAGAGGAAGAGAGATAGAGATGGGATCGGAACTCCTGCCGAAATGGGCGTCAAAGCCTTGCATCATGGGCATCGACGAAGCTGGTCGCGGCCCTGTTTTAGGTCCAATGGTTTATGGTTGCTTGTATTGCGCAGTCTCATATCAGAAGACTCTTTCCTCCTTGAACTTTGCAGATTCAAAGACTTTAAAAGAGGAGAAAAGGGAGGAACTATTTGAAAGTTTGAAGGCTGATGAGTCGATTGGATGGGCTGTTGATATCATTGATTCAAGGGAACTCTCAGCTAAAATGTTAAAGAAAAATAAGATAAACCTTAATGAAATATCACATGATTCAGCCATGGGCCTTGTCAGGAGGGCGCTGAACATGGGAGTTCTTTTAACTGAGGTGTATGTGGATACTGTTGGAGATCCAGAAAAGTACAGAATTAAATTGGCTGAAAGATTTCCATCTATCAAATTTGTGGTTGCTAAAAAAGCTGATAGTCTTTATCCAGTCGTAAGTGGAGCAAGCATAGTTGCAAAGGTCACAAGAGACCGAGCCTTGAGAGATTGGGTGCTTGATGAATCCGCTGAAAACATGCACAGAAACTTTGGGTCTGGATACCCAGGAGATCCTGAAACAAAGGATTGGTTGGAACATCATAAACACTCGGTTTTTGGATTCCCATCATTGGTCCGCTTCAGCTGGGGTACATGTAAGCCCTACTTCAAAGATATTGTTCAAGTTGCATGGGAATCTGATGAAATGGACGAAAATGGTTCCACCAGTCGGACAGGGAAGCGGCAATTGAAACTCAGCAGTGTTGGTTTCACTGGGATCAAAAGGAAAAGCGAAGAAATTGAATCAAGTGCTAAAGGCCGCTGCAAATTTTTCCTAGCTCGTAAACTCGAGCAACTCTCTCAATTCTAA

Network for GWHGAAZE005143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01351.19	RNase_HII	16	226	1.40E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10743	RNASEH2A	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0016070	biological_process	RNA metabolic process
GO:0004523	molecular_function	RNA-DNA hybrid ribonuclease activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.042
	SRR3591706	second leaf	41.504
	SRR3591707	mature leaf	36.432
	SRR3591708	Shoot apex	50.062
	SRR3591709	Stem	37.912
	SRR3591710	White floral bud	19.293
	SRR3591711	White flower	33.133
	SRR3591712	Green floral bud	25.269
	SRR3591713	Yellow flower	28.646
SRP173429	SRR8316895	Juvenile bud stage	35.348
	SRR8316896	Juvenile bud stage	43.453
	SRR8316897	Juvenile bud stage	18.521
	SRR8316894	Third green stage	15.259
	SRR8316900	Third green stage	35.464
	SRR8316901	Third green stage	34.630
	SRR8316898	Complete white stage	6.901
	SRR8316899	Complete white stage	49.123
	SRR8316903	Complete white stage	14.774
	SRR8316902	Silver flowering stage	13.238
	SRR8316904	Silver flowering stage	12.024
	SRR8316905	Silver flowering stage	7.123
	SRR8316906	Gold flowering stage	23.377
	SRR8316907	Gold flowering stage	25.363
	SRR8316908	Gold flowering stage	17.763
SRP132670	SRR6706286	Control	54.347
	SRR6706287	Light intensity 50%	49.502
	SRR6706288	Light intensity 20%	49.115
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.419
	CNS0095593	Slightly white alabastrum(diploid) 2	31.776
	CNS0095594	Slightly white alabastrum(diploid) 3	33.481
	CNS0095595	Whole white alabastrum(diploid) 2	28.279
	CNS0095596	Whole white alabastrum(diploid) 3	22.383
	CNS0095597	Whole white alabastrum(diploid) 4	27.565
	CNS0095598	Silvery flower (diploied) 1	40.410
	CNS0095599	Silvery flower (diploied) 2	43.121
	CNS0095600	Silvery flower (diploied) 3	24.230
	CNS0095601	Golden flower (diploid) 1	44.584
	CNS0095602	Golden flower (diploid) 2	25.391
	CNS0095603	Golden flower (diploid) 3	30.681
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.865
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.695
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.424
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.444
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.649
	CNS0095610	Silvery flower (tetraploid) 1	26.428
	CNS0095611	Silvery flower (tetraploid) 2	18.516
	CNS0095612	Silvery flower (tetraploid) 3	12.083
	CNS0095613	Golden flower (tetraploid) 1	15.132
	CNS0095614	Golden flower (tetraploid) 2	18.870
	CNS0095615	Golden flower (tetraploid) 3	7.914
CRA001975	CRR073297	Stem 1	48.067
	CRR073298	Stem 2	45.817
	CRR073299	Stem 3	45.886
	CRR073300	Leaf 1	33.655
	CRR073301	Leaf 2	42.864
	CRR073302	Leaf 3	38.168
	CRR073303	Juvenile bud 1	30.708
	CRR073304	Juvenile bud 2	19.238
	CRR073305	Juvenile bud 3	23.507
	CRR073306	Third green 1	4.603
	CRR073307	Third green 2	5.102
	CRR073308	Third green 3	5.186
	CRR073309	Second white 1	4.091
	CRR073310	Second white 2	3.495
	CRR073311	Second white 3	4.342
	CRR073312	Silver flowering 1	2.938
	CRR073313	Silver flowering 2	1.777
	CRR073314	Silver flowering 3	2.408
	CRR073315	Gold flowering 1	64.902
	CRR073316	Gold flowering 2	87.321
	CRR073317	Gold flowering 3	46.750
	CRR073318	Tawny withering 1	42.445
	CRR073319	Tawny withering 2	40.987
	CRR073320	Tawny withering 3	32.397