Gene detail

Detail information of GWHGAAZE005128

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006848581.1	hypothetical protein AMTR_s00168p00030500 [Amborella trichopoda]
Swissprot	tr\|Q9ZNT0\|VPS4_ARATH	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|W1PJL8\|W1PJL8_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN10162.1}
TAIR10	AT2G27600.1	AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3085329	3087951	+
GWHAAZE00000002	mRNA	3085329	3087951	+
GWHAAZE00000002	exon	3085329	3085839	+
GWHAAZE00000002	exon	3086259	3086364	+
GWHAAZE00000002	exon	3086600	3086831	+
GWHAAZE00000002	exon	3086982	3087050	+
GWHAAZE00000002	exon	3087147	3087221	+
GWHAAZE00000002	exon	3087368	3087466	+
GWHAAZE00000002	exon	3087589	3087744	+
GWHAAZE00000002	exon	3087826	3087951	+
GWHAAZE00000002	CDS	3085329	3085839	+
GWHAAZE00000002	CDS	3086259	3086364	+
GWHAAZE00000002	CDS	3086600	3086831	+
GWHAAZE00000002	CDS	3086982	3087050	+
GWHAAZE00000002	CDS	3087147	3087221	+
GWHAAZE00000002	CDS	3087368	3087466	+
GWHAAZE00000002	CDS	3087589	3087744	+
GWHAAZE00000002	CDS	3087826	3087951	+

Transcript Sequence
>GWHTAAZE005134 TTTTTTAGAAAAAGAAAAGAAAAGAAAAGAAAGTCAAAGATGTATAGCAATTTTAAGGAGCAGGCAATAACGTACGTGAAGCAGGCTATCGAGGAAGATAACGCGGGTAACTATGCCAAAGCTTTATCCCTTTATATGCATGCCTTAGAGTACTTCAAGACCCATTTGAAGTATGAGAAGAATCCAAAGATTAGAGAAGCAATTACTCAAAAATTCACAGACTATTTGAGGAGGGCAGAGGAGATTAGGGAAGTTCTTGACGGTGGAGGTAGTGGGCCCACCTCGAATGGAGACGCTGCTGTCAAGACACGGCCAAAGACTAAACCCAAGAACGGAGAAGGCGGAGATGGGGAGGATTCGGAGCAGGGGAAGCTCAGAGCTGGGCTTAATTCCGCAATAATAAGAGAGAAGCCAAATATTAAGTGGAATGATGTTGCTGGTCTTCAGACTGCCAAGCAGGCATTACAGGAGGCCGTTATATTACCTGTCAAGTTTCCACAATTTTTCACTGGGAAGCGTCGACCATGGCGGGCTTTTCTCTTATATGGACCACCTGGAACGGGAAAGTCATACTTAGCTAAGGCTGTTGCAACAGAAGCGGAGTCGACATTCTACAGGCCCTTTAGCATTAAATTCTGTGTGTATCCCAGTATTTCTTCATCAGACCTGGTTTCAAAATGGATGGGAGAAAGTGAAAAACTTGTTTCAAATCTGTTTCAAATGGCTCGTGAAAGTGCTCCCTCCATCATTTTCATCGATGAGATCGATTCTTTATGTGGCCAACGTGGTGACGGAAACGAAAGCGAAGCTTCTCGACGAATAAAAACAGAGCTTCTTGTACAAATGCAGGGTGTAGGGAACAACGATGAGAAAGTTCTTGTTCTTGCGGCAACAAATACTCCATATGCCTTGGACCAGGCTATCAGGCGGCGATTTGACAAACGAATTTACATACCTCTTCCCGATTTGAAAGCAAGGCAGCACATGTTCAAGGTACATCTAGGAGACACTCCTCATAACTTAACTGAAATTGATTTTGAGCGACTAGCTAATAAAACAGAAGGCTTCTCAGGTTCAGATATTTCTGTTTGTGTAAATGAAGTGTTGTTTGAACCTGTACGAAAAACTCAAGATGCCATGTTCTTTATAAAGAGTTCCAATGATGTGTGGGTTCCATGTGGACCTAGACAACCAGGTGCGGTTCAGACCACCATGCAAGAGTTAGCAGAACAAGGCCTAGCTTCACAGATTATCCCACCACCCATCACGAGGACAGATTTTGACAAAGTTTTGGCGAAACAGAAGCCAACTGTAAGCACAACAGATCTTCAAGTTCACGAGAGATTCACGAAAGAGTTTGGGGAGGAGGGCTGA

Network for GWHGAAZE005128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04212.19	MIT	20	84	2.00E-20
PF00004.30	AAA	180	320	1.00E-40
PF17862.2	AAA_lid_3	344	378	2.50E-06
PF09336.11	Vps4_C	390	454	2.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12196	VPS4	Endocytosis	map04144
K12196	VPS4	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.459
	SRR3591706	second leaf	2.335
	SRR3591707	mature leaf	10.005
	SRR3591708	Shoot apex	0.861
	SRR3591709	Stem	10.645
	SRR3591710	White floral bud	12.494
	SRR3591711	White flower	23.510
	SRR3591712	Green floral bud	7.875
	SRR3591713	Yellow flower	22.236
SRP173429	SRR8316895	Juvenile bud stage	1.282
	SRR8316896	Juvenile bud stage	2.774
	SRR8316897	Juvenile bud stage	1.540
	SRR8316894	Third green stage	1.716
	SRR8316900	Third green stage	5.291
	SRR8316901	Third green stage	6.704
	SRR8316898	Complete white stage	6.085
	SRR8316899	Complete white stage	16.627
	SRR8316903	Complete white stage	8.340
	SRR8316902	Silver flowering stage	13.027
	SRR8316904	Silver flowering stage	16.207
	SRR8316905	Silver flowering stage	7.973
	SRR8316906	Gold flowering stage	44.484
	SRR8316907	Gold flowering stage	37.487
	SRR8316908	Gold flowering stage	42.796
SRP132670	SRR6706286	Control	13.630
	SRR6706287	Light intensity 50%	12.099
	SRR6706288	Light intensity 20%	13.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.531
	CNS0095593	Slightly white alabastrum(diploid) 2	5.495
	CNS0095594	Slightly white alabastrum(diploid) 3	6.717
	CNS0095595	Whole white alabastrum(diploid) 2	6.446
	CNS0095596	Whole white alabastrum(diploid) 3	4.115
	CNS0095597	Whole white alabastrum(diploid) 4	7.635
	CNS0095598	Silvery flower (diploied) 1	10.184
	CNS0095599	Silvery flower (diploied) 2	7.900
	CNS0095600	Silvery flower (diploied) 3	14.663
	CNS0095601	Golden flower (diploid) 1	9.674
	CNS0095602	Golden flower (diploid) 2	11.107
	CNS0095603	Golden flower (diploid) 3	10.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.675
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.711
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.877
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.852
	CNS0095610	Silvery flower (tetraploid) 1	33.104
	CNS0095611	Silvery flower (tetraploid) 2	29.417
	CNS0095612	Silvery flower (tetraploid) 3	21.353
	CNS0095613	Golden flower (tetraploid) 1	28.594
	CNS0095614	Golden flower (tetraploid) 2	23.732
	CNS0095615	Golden flower (tetraploid) 3	32.988
CRA001975	CRR073297	Stem 1	1.635
	CRR073298	Stem 2	1.834
	CRR073299	Stem 3	0.339
	CRR073300	Leaf 1	5.951
	CRR073301	Leaf 2	4.740
	CRR073302	Leaf 3	2.931
	CRR073303	Juvenile bud 1	7.344
	CRR073304	Juvenile bud 2	4.165
	CRR073305	Juvenile bud 3	8.441
	CRR073306	Third green 1	3.298
	CRR073307	Third green 2	3.096
	CRR073308	Third green 3	2.844
	CRR073309	Second white 1	7.151
	CRR073310	Second white 2	11.855
	CRR073311	Second white 3	9.591
	CRR073312	Silver flowering 1	3.008
	CRR073313	Silver flowering 2	2.137
	CRR073314	Silver flowering 3	2.662
	CRR073315	Gold flowering 1	0.970
	CRR073316	Gold flowering 2	1.792
	CRR073317	Gold flowering 3	1.171
	CRR073318	Tawny withering 1	3.464
	CRR073319	Tawny withering 2	1.893
	CRR073320	Tawny withering 3	2.170