Gene detail

Detail information of GWHGAAZE005122

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010261.1	0	Kinase superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9SUA3\|D6KL1_ARATH	3E-139	Serine/threonine-protein kinase D6PKL1
trEMBL	tr\|A0A061FPS2\|A0A061FPS2_THECC	0	Kinase superfamily protein {ECO:0000313\|EMBL:EOY19071.1}
TAIR10	AT3G44610.1	4E-132	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3016617	3019627	+
GWHAAZE00000002	mRNA	3016617	3019627	+
GWHAAZE00000002	exon	3016617	3017161	+
GWHAAZE00000002	exon	3018814	3019627	+
GWHAAZE00000002	CDS	3016617	3017161	+
GWHAAZE00000002	CDS	3018814	3019627	+

Transcript Sequence
>GWHTAAZE005128 ATGGAGTTAACTTTAGATGACATCGGTGATGTCAGCTTTGACTCCAGTGCTTCCACCACCACCGCCGCCATGGAAATGAAGCTCAGCACTAGCTCTGGGTCTGAATCCACTGCATGGCCCGCCTCGAGCCTCATGTCATCCTCCACCAAGCCCCATGCACCCTCTAGGGATCCCGGGTGGGATGCCATCCATCTCGTCCAATCAGAAACTGCCATGATTGGCCTCCACGACTTGCGCTTCCTCCGGAGGCTTGGGAGCGGCGACATTGGCAGCGTGTACCTCGTGGAGTTAAAAGGAGCCTGTGAATGCATGTTTGCAGCTAAAGTGATGGATAAGGAGGAGTTAGTGAGTAGGAGCAAAGAAGGTAGGGCTAGGATAGAGAGGGAAATACTGGAAATGTTAGACCATCCATTTTTGCCCACCCTTTATGCCACGTTGGAGTCGGCGAGGTGGTCTTGTTTGTTGACTGAGTTTTGTCCCGGTGGTGACCTTCATATCCTCCGCCAACGGCAGCCGGAAAGGCGGTTTGATGAAGCTGCAGTCCGGTTTTATGCATCAGAAGTAGTGGTGGCTCTTGAATACCTCCACATGATGGGAATAGTGTACCGTGACCTAAAGCCGGAAAACGTCCTCATTAGATCCGACGGCCACATTATGCTCACTGATTTCGATCTCTGCTTAAAATGTCACAATTCTACTTCCACCTCTCAACTTGTTCACCATCAAAACCTACCCCTCACAACTCCCTCAAATGCCTGCAGCCTAATTCATCAACTTCCATTTCCTACGACATACCGTGTCCTACCCAATTGGGTTGTGCCAGCTGTCTCGTGCTTCCGGCAGGGGCCTAAGCACCGAAGGAGGAGGCGACAGGGAGGCTGCCGTGGTCCCCTTGAGATGGTGCTAGAGCCTATTGATGCTCGATCAATGTCATTTGTGGGGACCCACGAATATCTGTCTCCAGAGATTGTAAGTGGAAAAGGACACGGGAACGCCGTAGATTGGTGGACATTAGGAATATTTATATACGAATTGTTCTATGGCACAACACCATTTAGGGGAATGGACAATGAGTGCACCCTTGCTAATATTGTAGCTCGAGCCCTCGAGTTTCCTAAAGAGCCCTCCGTGCCATGTGCCGCTAAGGACTTGATCAGTCAACTCCTGAACAAGGATCCAACAAAGCGGATGGGCTCTATGATGGGGGCCATGGCGATCAAGCACCATTCGTTCTTTGATGGAGCGAATTGGGCACTACTGAGATGTACCACACCACCATATATTCCTCAGCCGCTCATATACCAGGACTTTGGTACAACAGATGATAGTTGTGATACTACATTAATAGGGTATTTCTAA

Network for GWHGAAZE005122

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	80	239	1.00E-34
PF00069.26	Pkinase	309	412	9.40E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.062
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.057
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.062
	SRR8316900	Third green stage	0.439
	SRR8316901	Third green stage	0.153
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	0.931
	SRR8316903	Complete white stage	0.129
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.025
	SRR8316906	Gold flowering stage	0.089
	SRR8316907	Gold flowering stage	0.077
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.570
	SRR6706287	Light intensity 50%	0.628
	SRR6706288	Light intensity 20%	0.749
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.119
	CNS0095594	Slightly white alabastrum(diploid) 3	0.162
	CNS0095595	Whole white alabastrum(diploid) 2	0.100
	CNS0095596	Whole white alabastrum(diploid) 3	0.138
	CNS0095597	Whole white alabastrum(diploid) 4	0.492
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.094
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.327
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.170
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.559
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.029
	CNS0095612	Silvery flower (tetraploid) 3	0.001
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.357
	CRR073298	Stem 2	0.166
	CRR073299	Stem 3	0.198
	CRR073300	Leaf 1	0.149
	CRR073301	Leaf 2	0.214
	CRR073302	Leaf 3	0.257
	CRR073303	Juvenile bud 1	1.268
	CRR073304	Juvenile bud 2	0.596
	CRR073305	Juvenile bud 3	1.383
	CRR073306	Third green 1	0.446
	CRR073307	Third green 2	0.076
	CRR073308	Third green 3	0.245
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000