Gene detail

Detail information of GWHGAAZE005093

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009787062.1	PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Nicotiana sylvestris]
Swissprot	tr\|Q4V3C8\|PDPK2_ARATH	3-phosphoinositide-dependent protein kinase 2
trEMBL	tr\|F6I5U0\|F6I5U0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62308.1}
TAIR10	AT3G10540.1	3-phosphoinositide-dependent protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2584037	2586967	+
GWHAAZE00000002	mRNA	2584037	2586967	+
GWHAAZE00000002	exon	2584037	2584330	+
GWHAAZE00000002	exon	2584477	2584648	+
GWHAAZE00000002	exon	2584778	2584830	+
GWHAAZE00000002	exon	2584971	2585072	+
GWHAAZE00000002	exon	2585143	2585194	+
GWHAAZE00000002	exon	2585334	2585412	+
GWHAAZE00000002	exon	2585544	2585709	+
GWHAAZE00000002	exon	2586012	2586146	+
GWHAAZE00000002	exon	2586230	2586351	+
GWHAAZE00000002	exon	2586440	2586662	+
GWHAAZE00000002	exon	2586884	2586967	+
GWHAAZE00000002	CDS	2584037	2584330	+
GWHAAZE00000002	CDS	2584477	2584648	+
GWHAAZE00000002	CDS	2584778	2584830	+
GWHAAZE00000002	CDS	2584971	2585072	+
GWHAAZE00000002	CDS	2585143	2585194	+
GWHAAZE00000002	CDS	2585334	2585412	+
GWHAAZE00000002	CDS	2585544	2585709	+
GWHAAZE00000002	CDS	2586012	2586146	+
GWHAAZE00000002	CDS	2586230	2586351	+
GWHAAZE00000002	CDS	2586440	2586662	+
GWHAAZE00000002	CDS	2586884	2586967	+

Transcript Sequence
>GWHTAAZE005099 ATGGAGAAAGATTTGGACTCCAAGCTTAGGATTCAGAACAATTCATCTCATGATCCTCCTAAAGCTGACGCTCATAACAATTCATCACATGATGTTAATGTTGATGTACATAAACAACACATTCAGAACAATTCATCTCATGATGATGCACGTAAACTTCAAAACAATTCACCTCAGGATGCTAAGGCCGACGCGCATAAACCTAAGAATTTCACATTTAGGGCACCACAGGAGCATTTTAACATCCAAGATTTCGAACTCGGCAAAATCTATGGCGTTGGTTCTTATTCCAAGGTTGTCAGAGCAAAGAAGAAAGACACGGGAACTGTATATGCCTTGAAGATCATGGATAAGAAATTCATTACCAAAGAAAATAAAACTGCTTACGTAAAGTTGGAGCGGATTGTACTCGATCAGTTGGATCATCCCGGCATTGTGCGGCTGTTTTTCACATTTCAAGACCCTTACATGGCACTCGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGCCGTTTGTCAGAGGATGAAGCTCGCTTCTACGCGGCTGAAGTTGTAGATGCTGTTGAATACATACATAAGTTAGGATTGATACATCGTGATATTAAGCCAGAGAACTTACTACTTACCATGGACGGACATATCAAAATTGCTGACTTTGATGATAAGGCTTGCACCTTTGTGGGGACAGCTGCTTATGTTCCTCCAGAAGTTTTAAATTCTTCACCTGCAACAGTCGGAAATGACCTGTGGGCAGTCGGCTGTACCTTGTACCAGATGCTTTCAGGAACTTCCCCCTTCAAAGATGCAAGCGAATGGCTCATTTTTCAAAGAATTATTGCCAGAGATATCAGATTCCCGAATTACTTTTCAGATGAAGCTAGAGATCTGATTGATAGGTTACTGGATATTGATCCTAGCAGAAGACCTGGTGCGGGACCTGATGGTTATGTTTCTCTAAAGAAGCATCCTTTCTTCGATGGAGTTGACTGGAAAAATTTAAGGTCACAAACCCCTCCTAAACTTGCTTTTGATCCAAAGGCTAAGTCAAGTGGGGGTGAAGATGTTCATGATTCTTCGCAGAACCCTTCACATGTTGGTGATGATGGTGCCTCATTATCTAGAACTCGGCTTGCGTCAATCGAATCCTTTGATTCAAAATGGCAAGAGTTTTTGGAGCCGGGTGAATCAGTTATTATGATCTCCATGGTCAAGAAATTGCAAAAGCTAACAAACAAGAAAGTACAGCTTATCCTCACCAACAAGCCCAAGTTGGTTTACGTGGATCCCTCAAAGCTAATGGTTAAAGGGAATATAATCTGGTCCAACAACCCTAACGACCTTAGCATCCAAGTTATTACCCCTTCTAATTTCAAGATTTGCACTCCCAAAAAAGTTATGTCGTTCGAGGATGCAAAACAGAGAGCCTTTCAGTGGAAAAAGGCAATCGAGGCACTTCAAAACCGGTGA

Network for GWHGAAZE005093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	87	330	2.10E-58
PF14593.7	PH_3	390	492	4.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_PDK1

KEGG pathway

KO	Enzyme	pathway	mapID
K06276	PDPK1	MAPK signaling pathway - yeast	map04011
		FoxO signaling pathway	map04068
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Apoptosis	map04210
		Focal adhesion	map04510
		T cell receptor signaling pathway	map04660
		Fc epsilon RI signaling pathway	map04664
		Insulin signaling pathway	map04910
		PPAR signaling pathway	map03320
		Thyroid hormone signaling pathway	map04919
		Aldosterone-regulated sodium reabsorption	map04960
		Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.392
	SRR3591706	second leaf	0.860
	SRR3591707	mature leaf	0.111
	SRR3591708	Shoot apex	1.841
	SRR3591709	Stem	2.277
	SRR3591710	White floral bud	31.600
	SRR3591711	White flower	1.292
	SRR3591712	Green floral bud	21.318
	SRR3591713	Yellow flower	0.545
SRP173429	SRR8316895	Juvenile bud stage	0.719
	SRR8316896	Juvenile bud stage	1.448
	SRR8316897	Juvenile bud stage	2.973
	SRR8316894	Third green stage	1.243
	SRR8316900	Third green stage	11.813
	SRR8316901	Third green stage	9.959
	SRR8316898	Complete white stage	0.356
	SRR8316899	Complete white stage	1.286
	SRR8316903	Complete white stage	0.411
	SRR8316902	Silver flowering stage	0.194
	SRR8316904	Silver flowering stage	0.684
	SRR8316905	Silver flowering stage	0.128
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.397
	SRR8316908	Gold flowering stage	0.587
SRP132670	SRR6706286	Control	3.605
	SRR6706287	Light intensity 50%	4.720
	SRR6706288	Light intensity 20%	3.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.446
	CNS0095593	Slightly white alabastrum(diploid) 2	5.465
	CNS0095594	Slightly white alabastrum(diploid) 3	4.204
	CNS0095595	Whole white alabastrum(diploid) 2	19.770
	CNS0095596	Whole white alabastrum(diploid) 3	20.247
	CNS0095597	Whole white alabastrum(diploid) 4	24.172
	CNS0095598	Silvery flower (diploied) 1	1.302
	CNS0095599	Silvery flower (diploied) 2	3.180
	CNS0095600	Silvery flower (diploied) 3	0.910
	CNS0095601	Golden flower (diploid) 1	1.963
	CNS0095602	Golden flower (diploid) 2	1.360
	CNS0095603	Golden flower (diploid) 3	0.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.156
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.827
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.567
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.535
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.824
	CNS0095610	Silvery flower (tetraploid) 1	0.406
	CNS0095611	Silvery flower (tetraploid) 2	2.179
	CNS0095612	Silvery flower (tetraploid) 3	5.064
	CNS0095613	Golden flower (tetraploid) 1	0.671
	CNS0095614	Golden flower (tetraploid) 2	0.314
	CNS0095615	Golden flower (tetraploid) 3	3.700
CRA001975	CRR073297	Stem 1	1.925
	CRR073298	Stem 2	1.402
	CRR073299	Stem 3	0.686
	CRR073300	Leaf 1	7.838
	CRR073301	Leaf 2	4.903
	CRR073302	Leaf 3	3.148
	CRR073303	Juvenile bud 1	10.378
	CRR073304	Juvenile bud 2	6.518
	CRR073305	Juvenile bud 3	1.387
	CRR073306	Third green 1	4.062
	CRR073307	Third green 2	5.242
	CRR073308	Third green 3	5.703
	CRR073309	Second white 1	0.200
	CRR073310	Second white 2	0.798
	CRR073311	Second white 3	0.678
	CRR073312	Silver flowering 1	5.590
	CRR073313	Silver flowering 2	4.070
	CRR073314	Silver flowering 3	2.279
	CRR073315	Gold flowering 1	5.951
	CRR073316	Gold flowering 2	1.377
	CRR073317	Gold flowering 3	1.738
	CRR073318	Tawny withering 1	4.495
	CRR073319	Tawny withering 2	5.429
	CRR073320	Tawny withering 3	6.122