Detail information of GWHGAAZE005081


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011101547.10PREDICTED: malate dehydrogenase [NADP], chloroplastic [Sesamum indicum]
Swissprottr|O48902|MDHP_MEDSA0Malate dehydrogenase [NADP], chloroplastic (Precursor)
trEMBLtr|D7TM20|D7TM20_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31387.3}
TAIR10AT5G58330.20lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene23787622384667-
GWHAAZE00000002mRNA23787622384667-
GWHAAZE00000002exon23787622378815-
GWHAAZE00000002exon23789032378956-
GWHAAZE00000002exon23792742379342-
GWHAAZE00000002exon23794392379507-
GWHAAZE00000002exon23801322380254-
GWHAAZE00000002exon23803532380454-
GWHAAZE00000002exon23805482380622-
GWHAAZE00000002exon23807152380805-
GWHAAZE00000002exon23808902380960-
GWHAAZE00000002exon23810792381260-
GWHAAZE00000002exon23821072382191-
GWHAAZE00000002exon23834722383558-
GWHAAZE00000002exon23842762384369-
GWHAAZE00000002exon23844892384667-
GWHAAZE00000002CDS23844892384667-
GWHAAZE00000002CDS23842762384369-
GWHAAZE00000002CDS23834722383558-
GWHAAZE00000002CDS23821072382191-
GWHAAZE00000002CDS23810792381260-
GWHAAZE00000002CDS23808902380960-
GWHAAZE00000002CDS23807152380805-
GWHAAZE00000002CDS23805482380622-
GWHAAZE00000002CDS23803532380454-
GWHAAZE00000002CDS23801322380254-
GWHAAZE00000002CDS23794392379507-
GWHAAZE00000002CDS23792742379342-
GWHAAZE00000002CDS23789032378956-
GWHAAZE00000002CDS23787622378815-
Transcript Sequence

Network for GWHGAAZE005081

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N1032504.10E-35
PF02866.19Ldh_1_C2534237.40E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00051E1.1.1.82 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0006108biological_processmalate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0005975biological_processcarbohydrate metabolic process
GO:0046554molecular_functionmalate dehydrogenase (NADP+) activity
GO:0016615molecular_functionmalate dehydrogenase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0003824molecular_functioncatalytic activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf156.128
SRR3591706second leaf260.408
SRR3591707mature leaf311.564
SRR3591708Shoot apex124.277
SRR3591709Stem135.936
SRR3591710White floral bud81.797
SRR3591711White flower130.441
SRR3591712Green floral bud78.096
SRR3591713Yellow flower116.452
SRP173429 SRR8316895Juvenile bud stage 91.596
SRR8316896Juvenile bud stage 93.486
SRR8316897Juvenile bud stage 61.549
SRR8316894Third green stage 43.252
SRR8316900Third green stage 142.738
SRR8316901Third green stage 125.324
SRR8316898Complete white stage 53.944
SRR8316899Complete white stage 203.131
SRR8316903Complete white stage 93.676
SRR8316902Silver flowering stage46.892
SRR8316904Silver flowering stage59.471
SRR8316905Silver flowering stage32.114
SRR8316906Gold flowering stage 113.312
SRR8316907Gold flowering stage 93.192
SRR8316908Gold flowering stage 107.219
SRP132670SRR6706286Control163.724
SRR6706287Light intensity 50%154.743
SRR6706288Light intensity 20%167.800
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.149
CNS0095593Slightly white alabastrum(diploid) 265.278
CNS0095594Slightly white alabastrum(diploid) 350.284
CNS0095595Whole white alabastrum(diploid) 268.283
CNS0095596Whole white alabastrum(diploid) 364.555
CNS0095597Whole white alabastrum(diploid) 467.289
CNS0095598Silvery flower (diploied) 1163.277
CNS0095599Silvery flower (diploied) 2158.047
CNS0095600Silvery flower (diploied) 3290.075
CNS0095601Golden flower (diploid) 1176.983
CNS0095602Golden flower (diploid) 2372.370
CNS0095603Golden flower (diploid) 3369.936
CNS0095604Slightly white alabastrum(tetraploid) 181.159
CNS0095605Slightly white alabastrum(tetraploid) 269.143
CNS0095606Slightly white alabastrum(tetraploid) 3154.526
CNS0095607Whole white alabastrum(tetraploid) 150.460
CNS0095608Whole white alabastrum(tetraploid) 253.167
CNS0095609Whole white alabastrum(tetraploid) 3135.334
CNS0095610Silvery flower (tetraploid) 1304.661
CNS0095611Silvery flower (tetraploid) 2393.380
CNS0095612Silvery flower (tetraploid) 3136.013
CNS0095613Golden flower (tetraploid) 1260.175
CNS0095614Golden flower (tetraploid) 2363.833
CNS0095615Golden flower (tetraploid) 3256.908
CRA001975CRR073297Stem 1123.412
CRR073298Stem 2101.968
CRR073299Stem 3121.698
CRR073300Leaf 156.557
CRR073301Leaf 263.403
CRR073302Leaf 358.882
CRR073303Juvenile bud 176.619
CRR073304Juvenile bud 244.809
CRR073305Juvenile bud 3101.277
CRR073306Third green 17.040
CRR073307Third green 28.478
CRR073308Third green 311.556
CRR073309Second white 134.005
CRR073310Second white 218.688
CRR073311Second white 318.791
CRR073312Silver flowering 132.109
CRR073313Silver flowering 255.407
CRR073314Silver flowering 355.658
CRR073315Gold flowering 1321.281
CRR073316Gold flowering 2444.253
CRR073317Gold flowering 3338.139
CRR073318Tawny withering 195.104
CRR073319Tawny withering 280.956
CRR073320Tawny withering 378.044