Gene detail

Detail information of GWHGAAZE005077

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010041.1	1.39301E-72	C2H2-type zinc finger family protein, putative [Theobroma cacao]
Swissprot	tr\|Q681X4\|ZAT5_ARATH	3E-46	Zinc finger protein ZAT5
trEMBL	tr\|A0A061FP50\|A0A061FP50_THECC	5E-73	C2H2-type zinc finger family protein, putative {ECO:0000313\|EMBL:EOY18851.1}
TAIR10	AT5G04390.1	3E-39	C2H2-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2339111	2340181	+
GWHAAZE00000002	mRNA	2339111	2340181	+
GWHAAZE00000002	exon	2339111	2340181	+
GWHAAZE00000002	CDS	2339111	2340181	+

Transcript Sequence
>GWHTAAZE005083 ATGGATTCAGCTAAGGAAATTATGACGGTGATTGGTCCTAAAGATCTTACTCATATCGTCAAAGGAAAACGAACAAAGCGCCAAAGGCCTCAATCCCCTATTCCTAATTTCACCATCACCACCGATTACATTAACAACATTAATTCTTCTCCGGCAAATTCCGCACACGAATTTGCCGACACGACAACCGAGGAGGACCAAGACACAGCCAAGTGCCTTCTTCTGTTATCGCAGGGTCCATCTCCAGACTCACCCAACATTATCAATTACAACATTAATCACGACGATAATTTGGTTGGTACGTACAAATTCACTAGCAAAAAGTACATCGAAACAAGTACCACAGGTAATGGCAAGGCAGGCATATACGTCTACGAGTGCAAAACTTGTAACCGCACATTTCCTTCATTTCAAGCGCTTGGTGGTCACCGAGCCAGCCACAAGAAGCCTAAGGCCACCAATCCCGAGGATAGAAAAAGGCCTTTATCCGACGAGGAGGAACCACCTCAATTCAAGCATAACAATTACATTTCTTCGGGTCTCTCTCTTCAATTGAGTAATAGGCCTCTTCTGTATACCAATACCAACAACAACAATAACAATATTAAGTCCAGTTCTAAGGTTCACGAGTGTGCAATTTGTGGGGCCGAATTTACGTCAGGGCAAGCACTAGGTGGCCATATGAGGCGGCATAGGGGGCCAGTCGCGGCTCCTGCTGCTGCCGCTGCTGCTGGTGCTAATACGGCATTGTCTTTGAGTCCGTCTAGCCCACCAATTGGGATTGACCATCAGTCCCATGAGGATAGTAATAAGAGGGCAAAATATGGGCTGTGTTTGGATTTGAACCTACCAGCAGCACCTGAACCAGAAGAGGAACAACCTGCAGTGACTGTTAATAATCAAGAATCAACAACAACAGCAGCAGCGGCAAAATTGTTGGGGTACAACTCCTCAAAGCAGCAAAATCAAACACCACAACACCATCACCAACAGCAGCAACAACAACAACAGAAACAACAATCGCCTCTTGTTTTGTCCGCTGCCCCAACTTTGGTGGATTGTCACTACTAA

Network for GWHGAAZE005077

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	124	149	7.90E-13
PF13912.7	zf-C2H2_6	208	233	9.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.166
	SRR3591706	second leaf	0.070
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	1.214
	SRR3591710	White floral bud	4.894
	SRR3591711	White flower	0.645
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.121
SRP173429	SRR8316895	Juvenile bud stage	0.081
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.060
	SRR8316900	Third green stage	0.083
	SRR8316901	Third green stage	0.202
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.081
	SRR8316903	Complete white stage	0.795
	SRR8316902	Silver flowering stage	0.411
	SRR8316904	Silver flowering stage	0.500
	SRR8316905	Silver flowering stage	0.064
	SRR8316906	Gold flowering stage	0.454
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	0.253
	SRR6706287	Light intensity 50%	0.723
	SRR6706288	Light intensity 20%	0.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.041
	CNS0095593	Slightly white alabastrum(diploid) 2	0.032
	CNS0095594	Slightly white alabastrum(diploid) 3	0.362
	CNS0095595	Whole white alabastrum(diploid) 2	0.165
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.757
	CNS0095599	Silvery flower (diploied) 2	1.068
	CNS0095600	Silvery flower (diploied) 3	0.505
	CNS0095601	Golden flower (diploid) 1	0.433
	CNS0095602	Golden flower (diploid) 2	0.472
	CNS0095603	Golden flower (diploid) 3	0.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.223
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.115
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.522
	CNS0095611	Silvery flower (tetraploid) 2	1.366
	CNS0095612	Silvery flower (tetraploid) 3	1.627
	CNS0095613	Golden flower (tetraploid) 1	0.187
	CNS0095614	Golden flower (tetraploid) 2	0.083
	CNS0095615	Golden flower (tetraploid) 3	0.911
CRA001975	CRR073297	Stem 1	0.689
	CRR073298	Stem 2	0.368
	CRR073299	Stem 3	0.471
	CRR073300	Leaf 1	0.161
	CRR073301	Leaf 2	0.530
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.188
	CRR073304	Juvenile bud 2	4.578
	CRR073305	Juvenile bud 3	0.842
	CRR073306	Third green 1	4.085
	CRR073307	Third green 2	6.318
	CRR073308	Third green 3	4.881
	CRR073309	Second white 1	0.316
	CRR073310	Second white 2	0.353
	CRR073311	Second white 3	0.433
	CRR073312	Silver flowering 1	3.821
	CRR073313	Silver flowering 2	3.287
	CRR073314	Silver flowering 3	0.825
	CRR073315	Gold flowering 1	2.834
	CRR073316	Gold flowering 2	0.582
	CRR073317	Gold flowering 3	0.933
	CRR073318	Tawny withering 1	3.206
	CRR073319	Tawny withering 2	2.667
	CRR073320	Tawny withering 3	2.740