Gene detail

Detail information of GWHGAAZE005065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002315330.1	7.84875E-25	glycine-rich RNA-binding family protein [Populus trichocarpa]
Swissprot	tr\|Q8RWN5\|RZ1C_ARATH	8E-13	Glycine-rich RNA-binding protein RZ1C {ECO:0000305}
trEMBL	tr\|B9HUL0\|B9HUL0_POPTR	3E-25	Glycine-rich RNA-binding family protein {ECO:0000313\|EMBL:EEF01501.1}
TAIR10	AT1G60650.2	0.0000003	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2208166	2212079	+
GWHAAZE00000002	mRNA	2208166	2212079	+
GWHAAZE00000002	exon	2208166	2208279	+
GWHAAZE00000002	exon	2211075	2211219	+
GWHAAZE00000002	exon	2211291	2211405	+
GWHAAZE00000002	exon	2211572	2211685	+
GWHAAZE00000002	exon	2212052	2212079	+
GWHAAZE00000002	CDS	2208166	2208279	+
GWHAAZE00000002	CDS	2211075	2211219	+
GWHAAZE00000002	CDS	2211291	2211405	+
GWHAAZE00000002	CDS	2211572	2211685	+
GWHAAZE00000002	CDS	2212052	2212079	+

Transcript Sequence
>GWHTAAZE005071 ATGGGTGGGAAAGAAGAAGAGTACCGTGTATTTGTAGGAGGTTTGTCAGGTGACGTCACCAAGCGCCAGCTAGAAGACGCCTTTAGCCGTTTCGGCAAAATTCTCGACTCTCAGGGAGATGCATGGAATAGAGTTAGAGTCATCTCGGTGAACAAGGCCAAACCCAGAATGGGTGGTGATGATGATCCGGCAATGGCTACAGTGGAGGAGGTTACTCATTTGGTGGTAGGAGCAGCAGCTTTGGGGGAGGAGGAGACAGGCGGTGCTCAATTCTCGTCTCGCCCTAGGTTTGGTGGGACTGGCGGTCGATATGGAGATCGCGATCGTTTCATTGATGATAGATATGATGGAGGGTGCTATGGGGATAGGGACTGGTTTCTGCCGAGGAGTGATAGGTTTGGAGGAGAGAGGTATTCAGATCGTTACCCAGTGAATGGGGACGGGAAAGAGAGGGAGTATGATAGGGATGGACACAGTAGCAGTGACAGGGTGGAAGCACCGTTAAAGTCGAGCTAA

Network for GWHGAAZE005065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	10	36	0.0001

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12885	RBMX, HNRNPG	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.256
	SRR3591706	second leaf	9.235
	SRR3591707	mature leaf	13.731
	SRR3591708	Shoot apex	17.087
	SRR3591709	Stem	12.000
	SRR3591710	White floral bud	8.962
	SRR3591711	White flower	9.282
	SRR3591712	Green floral bud	6.784
	SRR3591713	Yellow flower	7.213
SRP173429	SRR8316895	Juvenile bud stage	10.887
	SRR8316896	Juvenile bud stage	19.221
	SRR8316897	Juvenile bud stage	7.489
	SRR8316894	Third green stage	7.128
	SRR8316900	Third green stage	11.857
	SRR8316901	Third green stage	16.968
	SRR8316898	Complete white stage	5.247
	SRR8316899	Complete white stage	19.191
	SRR8316903	Complete white stage	13.430
	SRR8316902	Silver flowering stage	10.882
	SRR8316904	Silver flowering stage	14.371
	SRR8316905	Silver flowering stage	6.873
	SRR8316906	Gold flowering stage	17.017
	SRR8316907	Gold flowering stage	19.724
	SRR8316908	Gold flowering stage	19.267
SRP132670	SRR6706286	Control	18.372
	SRR6706287	Light intensity 50%	20.304
	SRR6706288	Light intensity 20%	18.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.542
	CNS0095593	Slightly white alabastrum(diploid) 2	15.376
	CNS0095594	Slightly white alabastrum(diploid) 3	17.866
	CNS0095595	Whole white alabastrum(diploid) 2	13.692
	CNS0095596	Whole white alabastrum(diploid) 3	6.792
	CNS0095597	Whole white alabastrum(diploid) 4	12.386
	CNS0095598	Silvery flower (diploied) 1	22.913
	CNS0095599	Silvery flower (diploied) 2	19.359
	CNS0095600	Silvery flower (diploied) 3	10.352
	CNS0095601	Golden flower (diploid) 1	20.522
	CNS0095602	Golden flower (diploid) 2	9.688
	CNS0095603	Golden flower (diploid) 3	11.138
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.549
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.034
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.483
	CNS0095610	Silvery flower (tetraploid) 1	20.225
	CNS0095611	Silvery flower (tetraploid) 2	9.347
	CNS0095612	Silvery flower (tetraploid) 3	7.234
	CNS0095613	Golden flower (tetraploid) 1	15.508
	CNS0095614	Golden flower (tetraploid) 2	15.123
	CNS0095615	Golden flower (tetraploid) 3	11.611
CRA001975	CRR073297	Stem 1	11.265
	CRR073298	Stem 2	11.153
	CRR073299	Stem 3	4.113
	CRR073300	Leaf 1	13.069
	CRR073301	Leaf 2	12.253
	CRR073302	Leaf 3	2.044
	CRR073303	Juvenile bud 1	3.962
	CRR073304	Juvenile bud 2	0.915
	CRR073305	Juvenile bud 3	2.218
	CRR073306	Third green 1	2.456
	CRR073307	Third green 2	0.487
	CRR073308	Third green 3	2.401
	CRR073309	Second white 1	0.658
	CRR073310	Second white 2	2.070
	CRR073311	Second white 3	1.112
	CRR073312	Silver flowering 1	0.669
	CRR073313	Silver flowering 2	0.075
	CRR073314	Silver flowering 3	0.635
	CRR073315	Gold flowering 1	1.439
	CRR073316	Gold flowering 2	5.477
	CRR073317	Gold flowering 3	0.663
	CRR073318	Tawny withering 1	3.952
	CRR073319	Tawny withering 2	9.126
	CRR073320	Tawny withering 3	5.804