Detail information of GWHGAAZE005052


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO48304.15.7523E-152hypothetical protein CISIN_1g006891mg [Citrus sinensis]
Swissprottr|Q9SS48|SDP6_ARATH1E-138Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial (Precursor)
trEMBLtr|A0A067DZB3|A0A067DZB3_CITSI2E-152Uncharacterized protein {ECO:0000313|EMBL:KDO48304.1}
TAIR10AT3G10370.15E-115FAD-dependent oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene20030042006646+
GWHAAZE00000002mRNA20030042006646+
GWHAAZE00000002exon20030042003273+
GWHAAZE00000002exon20040612004221+
GWHAAZE00000002exon20046302004888+
GWHAAZE00000002exon20063472006646+
GWHAAZE00000002CDS20030042003273+
GWHAAZE00000002CDS20040612004221+
GWHAAZE00000002CDS20046302004888+
GWHAAZE00000002CDS20063472006646+
Transcript Sequence

Network for GWHGAAZE005052

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160GO:0009331 glycerol-3-phosphate dehydrogenase complex GOslim:cellular_component
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GOslim:molecular_function
GO:0006072 glycerol-3-phosphate metabolic process GOslim:biological_process
map01200 Carbon metabolism
map04260 Cardiac muscle contraction
map01110 Biosynthesis of secondary metabolites
map01120 Microbial metabolism in diverse environments
map00190 Oxidative phosphorylation
map01100 Metabolic pathways
map04714 Thermogenesis
GO:0006096 glycolytic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map00020 Citrate cycle
map02020 Two-component system
map00564 Glycerophospholipid metabolism
GO:0055114 oxidation-reduction process GOslim:biological_process
map00010 Glycolysis / Gluconeogenesis
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0008121 ubiquinol-cytochrome-c reductase activity GOslim:molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity GOslim:molecular_function
GO:0000287 magnesium ion binding GOslim:molecular_function
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
GO:0004332 fructose-bisphosphate aldolase activity GOslim:molecular_function
GO:0048037 cofactor binding GOslim:molecular_function
GO:0003824 catalytic activity GOslim:molecular_function
GO:0004743 pyruvate kinase activity GOslim:molecular_function
GO:0030955 potassium ion binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16901.6DAO_C1653005.90E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00111glpA, glpD Biosynthesis of secondary metabolites map01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0006072biological_processglycerol-3-phosphate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004368molecular_functionglycerol-3-phosphate dehydrogenase (quinone) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.171
SRR3591706second leaf7.270
SRR3591707mature leaf4.846
SRR3591708Shoot apex17.778
SRR3591709Stem18.604
SRR3591710White floral bud25.036
SRR3591711White flower20.385
SRR3591712Green floral bud28.365
SRR3591713Yellow flower21.451
SRP173429 SRR8316895Juvenile bud stage 11.132
SRR8316896Juvenile bud stage 21.874
SRR8316897Juvenile bud stage 9.648
SRR8316894Third green stage 8.293
SRR8316900Third green stage 29.796
SRR8316901Third green stage 29.633
SRR8316898Complete white stage 18.137
SRR8316899Complete white stage 28.003
SRR8316903Complete white stage 20.976
SRR8316902Silver flowering stage19.264
SRR8316904Silver flowering stage27.423
SRR8316905Silver flowering stage15.188
SRR8316906Gold flowering stage 44.073
SRR8316907Gold flowering stage 42.432
SRR8316908Gold flowering stage 48.986
SRP132670SRR6706286Control21.285
SRR6706287Light intensity 50%23.173
SRR6706288Light intensity 20%26.164
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.793
CNS0095593Slightly white alabastrum(diploid) 219.477
CNS0095594Slightly white alabastrum(diploid) 322.411
CNS0095595Whole white alabastrum(diploid) 227.662
CNS0095596Whole white alabastrum(diploid) 327.794
CNS0095597Whole white alabastrum(diploid) 425.646
CNS0095598Silvery flower (diploied) 114.737
CNS0095599Silvery flower (diploied) 214.423
CNS0095600Silvery flower (diploied) 331.983
CNS0095601Golden flower (diploid) 116.854
CNS0095602Golden flower (diploid) 225.864
CNS0095603Golden flower (diploid) 323.561
CNS0095604Slightly white alabastrum(tetraploid) 125.935
CNS0095605Slightly white alabastrum(tetraploid) 227.607
CNS0095606Slightly white alabastrum(tetraploid) 313.554
CNS0095607Whole white alabastrum(tetraploid) 126.929
CNS0095608Whole white alabastrum(tetraploid) 234.929
CNS0095609Whole white alabastrum(tetraploid) 325.958
CNS0095610Silvery flower (tetraploid) 122.901
CNS0095611Silvery flower (tetraploid) 226.740
CNS0095612Silvery flower (tetraploid) 333.105
CNS0095613Golden flower (tetraploid) 118.501
CNS0095614Golden flower (tetraploid) 222.087
CNS0095615Golden flower (tetraploid) 340.834
CRA001975CRR073297Stem 124.761
CRR073298Stem 221.165
CRR073299Stem 321.598
CRR073300Leaf 136.052
CRR073301Leaf 234.343
CRR073302Leaf 326.537
CRR073303Juvenile bud 140.138
CRR073304Juvenile bud 233.952
CRR073305Juvenile bud 336.986
CRR073306Third green 145.891
CRR073307Third green 239.411
CRR073308Third green 341.899
CRR073309Second white 150.610
CRR073310Second white 238.248
CRR073311Second white 333.697
CRR073312Silver flowering 146.353
CRR073313Silver flowering 243.403
CRR073314Silver flowering 341.890
CRR073315Gold flowering 19.524
CRR073316Gold flowering 25.848
CRR073317Gold flowering 39.068
CRR073318Tawny withering 124.909
CRR073319Tawny withering 229.350
CRR073320Tawny withering 319.212