Detail information of GWHGAAZE005051


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009594954.10PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q9SS48|SDP6_ARATH0Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial (Precursor)
trEMBLtr|D7TM57|D7TM57_VITVI0Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}
TAIR10AT3G10370.15E-175FAD-dependent oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene19974182002194+
GWHAAZE00000002mRNA19974182002194+
GWHAAZE00000002exon19974181997757+
GWHAAZE00000002exon19995802000053+
GWHAAZE00000002exon20013742001705+
GWHAAZE00000002exon20019532002057+
GWHAAZE00000002exon20021472002194+
GWHAAZE00000002CDS19974181997757+
GWHAAZE00000002CDS19995802000053+
GWHAAZE00000002CDS20013742001705+
GWHAAZE00000002CDS20019532002057+
GWHAAZE00000002CDS20021472002194+
Transcript Sequence

Network for GWHGAAZE005051

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160GO:0009331 glycerol-3-phosphate dehydrogenase complex GOslim:cellular_component
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GOslim:molecular_function
GO:0006072 glycerol-3-phosphate metabolic process GOslim:biological_process
map01200 Carbon metabolism
map04260 Cardiac muscle contraction
map01110 Biosynthesis of secondary metabolites
map01120 Microbial metabolism in diverse environments
map00190 Oxidative phosphorylation
map01100 Metabolic pathways
map04714 Thermogenesis
GO:0006096 glycolytic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map00020 Citrate cycle
map02020 Two-component system
map00564 Glycerophospholipid metabolism
GO:0055114 oxidation-reduction process GOslim:biological_process
map00010 Glycolysis / Gluconeogenesis
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0008121 ubiquinol-cytochrome-c reductase activity GOslim:molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity GOslim:molecular_function
GO:0000287 magnesium ion binding GOslim:molecular_function
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
GO:0004332 fructose-bisphosphate aldolase activity GOslim:molecular_function
GO:0048037 cofactor binding GOslim:molecular_function
GO:0003824 catalytic activity GOslim:molecular_function
GO:0004743 pyruvate kinase activity GOslim:molecular_function
GO:0030955 potassium ion binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01266.25DAO793823.10E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00111glpA, glpD Biosynthesis of secondary metabolites map01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0006072biological_processglycerol-3-phosphate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004368molecular_functionglycerol-3-phosphate dehydrogenase (quinone) activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.493
SRR3591706second leaf6.043
SRR3591707mature leaf5.365
SRR3591708Shoot apex11.098
SRR3591709Stem13.691
SRR3591710White floral bud23.801
SRR3591711White flower17.147
SRR3591712Green floral bud21.787
SRR3591713Yellow flower18.497
SRP173429 SRR8316895Juvenile bud stage 10.487
SRR8316896Juvenile bud stage 20.323
SRR8316897Juvenile bud stage 8.432
SRR8316894Third green stage 8.535
SRR8316900Third green stage 29.883
SRR8316901Third green stage 23.745
SRR8316898Complete white stage 20.865
SRR8316899Complete white stage 24.199
SRR8316903Complete white stage 24.947
SRR8316902Silver flowering stage18.038
SRR8316904Silver flowering stage25.128
SRR8316905Silver flowering stage14.850
SRR8316906Gold flowering stage 50.211
SRR8316907Gold flowering stage 43.900
SRR8316908Gold flowering stage 49.251
SRP132670SRR6706286Control35.859
SRR6706287Light intensity 50%40.210
SRR6706288Light intensity 20%40.902
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.069
CNS0095593Slightly white alabastrum(diploid) 28.516
CNS0095594Slightly white alabastrum(diploid) 310.444
CNS0095595Whole white alabastrum(diploid) 215.479
CNS0095596Whole white alabastrum(diploid) 316.347
CNS0095597Whole white alabastrum(diploid) 416.212
CNS0095598Silvery flower (diploied) 110.636
CNS0095599Silvery flower (diploied) 29.128
CNS0095600Silvery flower (diploied) 337.071
CNS0095601Golden flower (diploid) 18.247
CNS0095602Golden flower (diploid) 231.052
CNS0095603Golden flower (diploid) 330.814
CNS0095604Slightly white alabastrum(tetraploid) 119.254
CNS0095605Slightly white alabastrum(tetraploid) 214.670
CNS0095606Slightly white alabastrum(tetraploid) 314.615
CNS0095607Whole white alabastrum(tetraploid) 119.626
CNS0095608Whole white alabastrum(tetraploid) 225.599
CNS0095609Whole white alabastrum(tetraploid) 330.552
CNS0095610Silvery flower (tetraploid) 125.553
CNS0095611Silvery flower (tetraploid) 233.208
CNS0095612Silvery flower (tetraploid) 338.717
CNS0095613Golden flower (tetraploid) 113.793
CNS0095614Golden flower (tetraploid) 223.698
CNS0095615Golden flower (tetraploid) 347.185
CRA001975CRR073297Stem 126.011
CRR073298Stem 222.599
CRR073299Stem 324.037
CRR073300Leaf 149.257
CRR073301Leaf 235.940
CRR073302Leaf 332.678
CRR073303Juvenile bud 144.955
CRR073304Juvenile bud 245.185
CRR073305Juvenile bud 343.567
CRR073306Third green 159.743
CRR073307Third green 241.020
CRR073308Third green 346.113
CRR073309Second white 159.171
CRR073310Second white 246.294
CRR073311Second white 351.009
CRR073312Silver flowering 152.966
CRR073313Silver flowering 258.108
CRR073314Silver flowering 350.013
CRR073315Gold flowering 18.890
CRR073316Gold flowering 27.855
CRR073317Gold flowering 38.431
CRR073318Tawny withering 119.991
CRR073319Tawny withering 219.703
CRR073320Tawny withering 320.332