Gene detail

Detail information of GWHGAAZE005041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007009900.1	0	Receptor-like protein kinase [Theobroma cacao]
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	1E-100	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|A0A061FN48\|A0A061FN48_THECC	0	Receptor-like protein kinase {ECO:0000313\|EMBL:EOY18710.1}
TAIR10	AT3G09830.2	8E-130	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1770314	1772095	+
GWHAAZE00000002	mRNA	1770314	1772095	+
GWHAAZE00000002	exon	1770314	1770701	+
GWHAAZE00000002	exon	1770974	1771161	+
GWHAAZE00000002	exon	1771282	1771404	+
GWHAAZE00000002	exon	1771495	1772095	+
GWHAAZE00000002	CDS	1770314	1770701	+
GWHAAZE00000002	CDS	1770974	1771161	+
GWHAAZE00000002	CDS	1771282	1771404	+
GWHAAZE00000002	CDS	1771495	1771998	+
GWHAAZE00000002	three_prime_UTR	1771999	1772095	+

Transcript Sequence
>GWHTAAZE005047 ATGAAGTGTTTCTCATTCTTCAACGGAGATAATAAAGACAATGAACCCAAGACCACAAAATCTGCTTCGGTTCCTTCCTCTACTTCCATGTCAACTGATCCCGAGCTCACCAAATCTGGGTCTGACTTTAATTCACAGGATGCCTCGGATATAAGCACCGAATCCTCTAAAAGGTTATCGATCAAAAGTTTGTCTCCAAGGTCGAATAATCTGAGAGTGTTTACGTTAGCAGAGCTGAAGACAGCCACTAGGAATTTCAGCCGTTCCCTCGTGATTGGAGAAGGTGGATTTGGGGCTGTATACAAAGGTGTTATACGTGATACAGCAGATTTGAACAAAAAGATCAACATTGCCGTTAAACAACTCAGCCGAAGAGGGTTGCAGGCAGGTTATTGTGCGGAGGATGACGAAAGAGGAATCCAACGGCTTTTGATATATGAATATATGCCCAAAATAAGTGTACTAGATCATTTATCAAGCAGACTTGAGACACCTCTACCGTGGGATACTAGATTAAAAATAGCCCAGGATGCTGCCCGAGGCTTAGCATATCTCCATGAAGGAATGGATTTTCAGATTATCTTCAGAGATCTCAAATCTTCCAACATACTCTTGGATGACCAATGGAATGCAAAGCTTTCAGATTTTGGGTTGGCTAGGCTTGGCCCTTTGGATGGATTAAGCCACGTCTCAACAGCAATAGTTGGAACAGTAGGATATGCAGCGCCAGAATATGTGCAAACAGGGCGCCTTACATCAAAGAGTGATGTGTGGAGCTACGGAGTGTTCCTCTACGAACTCATAACGGGGAGACGCCCTTTGGACCGAAACAGACCGAAGAACGAGCAGAAGCTGTTGGAGTGGGTGAGGCAACACCTCTCTGACATGAAGAAGTTTCAACTGATTTTAGACCCTCAGCTAAATGGCAAATATTCCCTCAAGTCTGCTCAAAAGCTAGCTGCCATTGCCAACATGTGCTTAGTACGACACCCGAAACTGCGACCCAAAATGGGAAAAGTCTTGGAGATGGTGAACCATATCGTGGAGGAAACCGACCCCATTAGAAATCCGGGATTTCCTCTAGAGATCTCTTGCACTCCCAAAGCGGTTTGTGAAGAAGAGTCCTTCATAAGAGTAGGTTTGAGAAGAAGGTTTATAGATTCTTTAAGTGGAGAAACAAGATGCTTCTTCTGGCAAACATGAAGGCCTAAAAGCTTTTGACTGACCACTTCACTGCAAGAAATATTTCCATTTCCAGAAATGTTAATCAGACAATTCAAGTTCGATCTCGGGCTTCATG

Network for GWHGAAZE005041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	141	342	3.30E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.883
	SRR3591706	second leaf	0.080
	SRR3591707	mature leaf	0.127
	SRR3591708	Shoot apex	0.345
	SRR3591709	Stem	1.450
	SRR3591710	White floral bud	0.505
	SRR3591711	White flower	2.109
	SRR3591712	Green floral bud	0.813
	SRR3591713	Yellow flower	2.342
SRP173429	SRR8316895	Juvenile bud stage	1.566
	SRR8316896	Juvenile bud stage	2.670
	SRR8316897	Juvenile bud stage	2.044
	SRR8316894	Third green stage	0.678
	SRR8316900	Third green stage	0.681
	SRR8316901	Third green stage	1.186
	SRR8316898	Complete white stage	0.368
	SRR8316899	Complete white stage	2.854
	SRR8316903	Complete white stage	0.388
	SRR8316902	Silver flowering stage	3.770
	SRR8316904	Silver flowering stage	2.692
	SRR8316905	Silver flowering stage	1.302
	SRR8316906	Gold flowering stage	7.257
	SRR8316907	Gold flowering stage	9.150
	SRR8316908	Gold flowering stage	6.927
SRP132670	SRR6706286	Control	0.730
	SRR6706287	Light intensity 50%	1.320
	SRR6706288	Light intensity 20%	0.859
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.266
	CNS0095593	Slightly white alabastrum(diploid) 2	2.469
	CNS0095594	Slightly white alabastrum(diploid) 3	1.201
	CNS0095595	Whole white alabastrum(diploid) 2	1.284
	CNS0095596	Whole white alabastrum(diploid) 3	0.600
	CNS0095597	Whole white alabastrum(diploid) 4	0.333
	CNS0095598	Silvery flower (diploied) 1	3.497
	CNS0095599	Silvery flower (diploied) 2	0.965
	CNS0095600	Silvery flower (diploied) 3	3.532
	CNS0095601	Golden flower (diploid) 1	2.308
	CNS0095602	Golden flower (diploid) 2	3.161
	CNS0095603	Golden flower (diploid) 3	3.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.371
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.195
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.524
	CNS0095610	Silvery flower (tetraploid) 1	1.160
	CNS0095611	Silvery flower (tetraploid) 2	0.265
	CNS0095612	Silvery flower (tetraploid) 3	1.240
	CNS0095613	Golden flower (tetraploid) 1	2.016
	CNS0095614	Golden flower (tetraploid) 2	1.833
	CNS0095615	Golden flower (tetraploid) 3	0.955
CRA001975	CRR073297	Stem 1	1.407
	CRR073298	Stem 2	0.597
	CRR073299	Stem 3	0.573
	CRR073300	Leaf 1	0.308
	CRR073301	Leaf 2	0.991
	CRR073302	Leaf 3	0.231
	CRR073303	Juvenile bud 1	0.061
	CRR073304	Juvenile bud 2	0.423
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	3.968
	CRR073307	Third green 2	2.392
	CRR073308	Third green 3	2.579
	CRR073309	Second white 1	2.515
	CRR073310	Second white 2	3.161
	CRR073311	Second white 3	3.883
	CRR073312	Silver flowering 1	8.902
	CRR073313	Silver flowering 2	5.516
	CRR073314	Silver flowering 3	4.249
	CRR073315	Gold flowering 1	0.539
	CRR073316	Gold flowering 2	2.504
	CRR073317	Gold flowering 3	0.986
	CRR073318	Tawny withering 1	1.977
	CRR073319	Tawny withering 2	3.447
	CRR073320	Tawny withering 3	2.112