Detail information of GWHGAAZE005018


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13568.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LTV6|DECR2_ARATH1E-160Peroxisomal 2,4-dienoyl-CoA reductase
trEMBLtr|A0A068V0Z4|A0A068V0Z4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13568.1}
TAIR10AT3G12800.12E-124short-chain dehydrogenase-reductase B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene13558861360354+
GWHAAZE00000002mRNA13558861360354+
GWHAAZE00000002exon13558861356077+
GWHAAZE00000002exon13562111356374+
GWHAAZE00000002exon13592131359417+
GWHAAZE00000002exon13595091359731+
GWHAAZE00000002exon13602001360354+
GWHAAZE00000002CDS13558861356077+
GWHAAZE00000002CDS13562111356374+
GWHAAZE00000002CDS13592131359417+
GWHAAZE00000002CDS13595091359731+
GWHAAZE00000002CDS13602001360354+
Transcript Sequence

Network for GWHGAAZE005018

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13561.7adh_short_C2242765.40E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13237DECR2 Peroxisome map04146

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf110.652
SRR3591706second leaf129.154
SRR3591707mature leaf93.078
SRR3591708Shoot apex101.564
SRR3591709Stem99.964
SRR3591710White floral bud512.551
SRR3591711White flower540.074
SRR3591712Green floral bud247.939
SRR3591713Yellow flower554.482
SRP173429 SRR8316895Juvenile bud stage 71.164
SRR8316896Juvenile bud stage 92.537
SRR8316897Juvenile bud stage 49.118
SRR8316894Third green stage 42.916
SRR8316900Third green stage 191.982
SRR8316901Third green stage 201.861
SRR8316898Complete white stage 180.475
SRR8316899Complete white stage 265.968
SRR8316903Complete white stage 212.153
SRR8316902Silver flowering stage191.771
SRR8316904Silver flowering stage192.725
SRR8316905Silver flowering stage130.437
SRR8316906Gold flowering stage 460.126
SRR8316907Gold flowering stage 386.253
SRR8316908Gold flowering stage 395.151
SRP132670SRR6706286Control188.248
SRR6706287Light intensity 50%193.946
SRR6706288Light intensity 20%204.387
CNP0000432CNS0095592Slightly white alabastrum(diploid) 193.865
CNS0095593Slightly white alabastrum(diploid) 2107.802
CNS0095594Slightly white alabastrum(diploid) 381.296
CNS0095595Whole white alabastrum(diploid) 293.344
CNS0095596Whole white alabastrum(diploid) 3100.472
CNS0095597Whole white alabastrum(diploid) 485.440
CNS0095598Silvery flower (diploied) 197.266
CNS0095599Silvery flower (diploied) 2110.705
CNS0095600Silvery flower (diploied) 3286.892
CNS0095601Golden flower (diploid) 1114.725
CNS0095602Golden flower (diploid) 2206.234
CNS0095603Golden flower (diploid) 3190.634
CNS0095604Slightly white alabastrum(tetraploid) 1137.453
CNS0095605Slightly white alabastrum(tetraploid) 2100.453
CNS0095606Slightly white alabastrum(tetraploid) 3213.808
CNS0095607Whole white alabastrum(tetraploid) 181.482
CNS0095608Whole white alabastrum(tetraploid) 296.237
CNS0095609Whole white alabastrum(tetraploid) 3224.238
CNS0095610Silvery flower (tetraploid) 1368.566
CNS0095611Silvery flower (tetraploid) 2397.655
CNS0095612Silvery flower (tetraploid) 3429.250
CNS0095613Golden flower (tetraploid) 1290.463
CNS0095614Golden flower (tetraploid) 2404.034
CNS0095615Golden flower (tetraploid) 3316.645
CRA001975CRR073297Stem 1128.741
CRR073298Stem 2135.867
CRR073299Stem 3153.468
CRR073300Leaf 1216.207
CRR073301Leaf 2206.480
CRR073302Leaf 3284.569
CRR073303Juvenile bud 1308.075
CRR073304Juvenile bud 2449.488
CRR073305Juvenile bud 3235.795
CRR073306Third green 1787.206
CRR073307Third green 2547.484
CRR073308Third green 3522.564
CRR073309Second white 1604.781
CRR073310Second white 2439.184
CRR073311Second white 3355.796
CRR073312Silver flowering 1258.935
CRR073313Silver flowering 2327.328
CRR073314Silver flowering 3252.816
CRR073315Gold flowering 178.222
CRR073316Gold flowering 279.177
CRR073317Gold flowering 398.359
CRR073318Tawny withering 198.527
CRR073319Tawny withering 289.350
CRR073320Tawny withering 380.361