Detail information of GWHGAAZE005015


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011013977.10PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Populus euphratica]
Swissprottr|Q5E924|G3PP2_ARATH0Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic (Precursor)
trEMBLtr|A9PHA3|A9PHA3_POPTR0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}
TAIR10AT1G16300.10glyceraldehyde-3-phosphate dehydrogenase of plastid 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene12754201282401-
GWHAAZE00000002mRNA12754201282401-
GWHAAZE00000002exon12822881282401-
GWHAAZE00000002exon12813011281380-
GWHAAZE00000002exon12811371281204-
GWHAAZE00000002exon12810151281053-
GWHAAZE00000002exon12805941280694-
GWHAAZE00000002exon12778801277992-
GWHAAZE00000002exon12776561277755-
GWHAAZE00000002exon12774231277569-
GWHAAZE00000002exon12768171276877-
GWHAAZE00000002exon12766271276724-
GWHAAZE00000002exon12763951276537-
GWHAAZE00000002exon12762201276303-
GWHAAZE00000002exon12758521275941-
GWHAAZE00000002exon12754201275728-
GWHAAZE00000002CDS12822881282401-
GWHAAZE00000002CDS12813011281380-
GWHAAZE00000002CDS12811371281204-
GWHAAZE00000002CDS12810151281053-
GWHAAZE00000002CDS12805941280694-
GWHAAZE00000002CDS12778801277992-
GWHAAZE00000002CDS12776561277755-
GWHAAZE00000002CDS12774231277569-
GWHAAZE00000002CDS12768171276877-
GWHAAZE00000002CDS12766271276724-
GWHAAZE00000002CDS12763951276537-
GWHAAZE00000002CDS12762201276303-
GWHAAZE00000002CDS12758521275941-
GWHAAZE00000002CDS12756741275728-
GWHAAZE00000002three_prime_UTR12754201275673-
Transcript Sequence

Network for GWHGAAZE005015

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00044.25Gp_dh_N961969.20E-37
PF02800.21Gp_dh_C2494061.00E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00134GAPDH, gapA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006006biological_processglucose metabolic process
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661molecular_functionNADP binding
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf170.843
SRR3591706second leaf36.931
SRR3591707mature leaf9.953
SRR3591708Shoot apex164.720
SRR3591709Stem104.221
SRR3591710White floral bud105.136
SRR3591711White flower111.562
SRR3591712Green floral bud173.126
SRR3591713Yellow flower72.941
SRP173429 SRR8316895Juvenile bud stage 89.780
SRR8316896Juvenile bud stage 121.092
SRR8316897Juvenile bud stage 58.422
SRR8316894Third green stage 48.583
SRR8316900Third green stage 142.113
SRR8316901Third green stage 141.427
SRR8316898Complete white stage 28.620
SRR8316899Complete white stage 90.665
SRR8316903Complete white stage 50.493
SRR8316902Silver flowering stage26.275
SRR8316904Silver flowering stage30.135
SRR8316905Silver flowering stage12.063
SRR8316906Gold flowering stage 36.037
SRR8316907Gold flowering stage 39.849
SRR8316908Gold flowering stage 56.264
SRP132670SRR6706286Control123.458
SRR6706287Light intensity 50%137.974
SRR6706288Light intensity 20%146.435
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1141.738
CNS0095593Slightly white alabastrum(diploid) 2137.578
CNS0095594Slightly white alabastrum(diploid) 3143.445
CNS0095595Whole white alabastrum(diploid) 2122.255
CNS0095596Whole white alabastrum(diploid) 3125.976
CNS0095597Whole white alabastrum(diploid) 4116.245
CNS0095598Silvery flower (diploied) 167.136
CNS0095599Silvery flower (diploied) 262.104
CNS0095600Silvery flower (diploied) 353.881
CNS0095601Golden flower (diploid) 142.185
CNS0095602Golden flower (diploid) 246.032
CNS0095603Golden flower (diploid) 344.034
CNS0095604Slightly white alabastrum(tetraploid) 1162.665
CNS0095605Slightly white alabastrum(tetraploid) 2151.654
CNS0095606Slightly white alabastrum(tetraploid) 3191.171
CNS0095607Whole white alabastrum(tetraploid) 1114.074
CNS0095608Whole white alabastrum(tetraploid) 296.467
CNS0095609Whole white alabastrum(tetraploid) 3147.481
CNS0095610Silvery flower (tetraploid) 178.814
CNS0095611Silvery flower (tetraploid) 245.832
CNS0095612Silvery flower (tetraploid) 358.280
CNS0095613Golden flower (tetraploid) 161.547
CNS0095614Golden flower (tetraploid) 275.479
CNS0095615Golden flower (tetraploid) 321.443
CRA001975CRR073297Stem 1156.627
CRR073298Stem 2146.010
CRR073299Stem 3181.866
CRR073300Leaf 1166.296
CRR073301Leaf 2159.303
CRR073302Leaf 3184.166
CRR073303Juvenile bud 1174.467
CRR073304Juvenile bud 2182.011
CRR073305Juvenile bud 3159.667
CRR073306Third green 183.956
CRR073307Third green 273.128
CRR073308Third green 378.267
CRR073309Second white 150.300
CRR073310Second white 236.994
CRR073311Second white 332.702
CRR073312Silver flowering 180.167
CRR073313Silver flowering 2119.259
CRR073314Silver flowering 3105.102
CRR073315Gold flowering 122.917
CRR073316Gold flowering 234.515
CRR073317Gold flowering 327.888
CRR073318Tawny withering 1153.118
CRR073319Tawny withering 296.755
CRR073320Tawny withering 3173.313