Detail information of GWHGAAZE004991


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645092.12.8835E-127PREDICTED: myb family transcription factor APL isoform X1 [Vitis vinifera]
Swissprottr|Q9SAK5|APL_ARATH5E-89Myb family transcription factor APL
trEMBLtr|W9R1F0|W9R1F0_9ROSA3E-125Myb family transcription factor APL {ECO:0000313|EMBL:EXB51246.1}
TAIR10AT1G79430.21E-73Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene894654897126-
GWHAAZE00000002mRNA894654897126-
GWHAAZE00000002exon894654895586-
GWHAAZE00000002exon895922895991-
GWHAAZE00000002exon896348896414-
GWHAAZE00000002exon896587896644-
GWHAAZE00000002exon896818896894-
GWHAAZE00000002exon897000897126-
GWHAAZE00000002CDS897000897126-
GWHAAZE00000002CDS896818896894-
GWHAAZE00000002CDS896587896644-
GWHAAZE00000002CDS896348896414-
GWHAAZE00000002CDS895922895991-
GWHAAZE00000002CDS894654895586-
Transcript Sequence

Network for GWHGAAZE004991

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding21692.60E-06
PF14379.7Myb_CC_LHEQLE1121594.00E-26
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.327
SRR3591706second leaf15.054
SRR3591707mature leaf18.680
SRR3591708Shoot apex11.778
SRR3591709Stem27.916
SRR3591710White floral bud8.466
SRR3591711White flower8.782
SRR3591712Green floral bud11.916
SRR3591713Yellow flower3.838
SRP173429 SRR8316895Juvenile bud stage 4.762
SRR8316896Juvenile bud stage 5.086
SRR8316897Juvenile bud stage 2.284
SRR8316894Third green stage 3.359
SRR8316900Third green stage 5.852
SRR8316901Third green stage 5.822
SRR8316898Complete white stage 1.535
SRR8316899Complete white stage 11.210
SRR8316903Complete white stage 4.273
SRR8316902Silver flowering stage1.675
SRR8316904Silver flowering stage3.401
SRR8316905Silver flowering stage1.221
SRR8316906Gold flowering stage 0.834
SRR8316907Gold flowering stage 2.449
SRR8316908Gold flowering stage 3.322
SRP132670SRR6706286Control3.089
SRR6706287Light intensity 50%2.703
SRR6706288Light intensity 20%3.272
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.565
CNS0095593Slightly white alabastrum(diploid) 210.022
CNS0095594Slightly white alabastrum(diploid) 39.067
CNS0095595Whole white alabastrum(diploid) 26.880
CNS0095596Whole white alabastrum(diploid) 33.733
CNS0095597Whole white alabastrum(diploid) 46.346
CNS0095598Silvery flower (diploied) 15.715
CNS0095599Silvery flower (diploied) 25.878
CNS0095600Silvery flower (diploied) 33.362
CNS0095601Golden flower (diploid) 16.950
CNS0095602Golden flower (diploid) 23.769
CNS0095603Golden flower (diploid) 33.740
CNS0095604Slightly white alabastrum(tetraploid) 17.178
CNS0095605Slightly white alabastrum(tetraploid) 29.620
CNS0095606Slightly white alabastrum(tetraploid) 39.553
CNS0095607Whole white alabastrum(tetraploid) 17.795
CNS0095608Whole white alabastrum(tetraploid) 26.593
CNS0095609Whole white alabastrum(tetraploid) 32.059
CNS0095610Silvery flower (tetraploid) 13.944
CNS0095611Silvery flower (tetraploid) 23.138
CNS0095612Silvery flower (tetraploid) 32.504
CNS0095613Golden flower (tetraploid) 15.104
CNS0095614Golden flower (tetraploid) 23.940
CNS0095615Golden flower (tetraploid) 33.112
CRA001975CRR073297Stem 16.542
CRR073298Stem 25.403
CRR073299Stem 36.140
CRR073300Leaf 16.633
CRR073301Leaf 210.584
CRR073302Leaf 35.021
CRR073303Juvenile bud 18.981
CRR073304Juvenile bud 22.366
CRR073305Juvenile bud 315.112
CRR073306Third green 11.998
CRR073307Third green 23.400
CRR073308Third green 34.243
CRR073309Second white 11.083
CRR073310Second white 22.048
CRR073311Second white 31.328
CRR073312Silver flowering 11.716
CRR073313Silver flowering 21.173
CRR073314Silver flowering 32.477
CRR073315Gold flowering 114.375
CRR073316Gold flowering 212.636
CRR073317Gold flowering 313.985
CRR073318Tawny withering 138.126
CRR073319Tawny withering 280.107
CRR073320Tawny withering 342.800