Gene detail

Detail information of GWHGAAZE004979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645083.1	1.1379E-128	PREDICTED: nuclear-pore anchor isoform X2 [Vitis vinifera]
Swissprot	tr\|A4GSN8\|NUA_ARATH	3E-98	Nuclear-pore anchor {ECO:0000303\|PubMed:17513499, ECO:0000303\|PubMed:21189294}
trEMBL	tr\|D7T103\|D7T103_VITVI	5E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24130.3}
TAIR10	AT1G79280.1	2E-87	nuclear pore anchor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	698176	702184	-
GWHAAZE00000002	mRNA	698176	702184	-
GWHAAZE00000002	exon	702101	702184	-
GWHAAZE00000002	exon	701899	701947	-
GWHAAZE00000002	exon	700471	700574	-
GWHAAZE00000002	exon	700295	700363	-
GWHAAZE00000002	exon	699843	699986	-
GWHAAZE00000002	exon	699622	699726	-
GWHAAZE00000002	exon	699396	699509	-
GWHAAZE00000002	exon	699207	699285	-
GWHAAZE00000002	exon	698324	698367	-
GWHAAZE00000002	exon	698176	698253	-
GWHAAZE00000002	CDS	702101	702184	-
GWHAAZE00000002	CDS	701899	701947	-
GWHAAZE00000002	CDS	700471	700574	-
GWHAAZE00000002	CDS	700295	700363	-
GWHAAZE00000002	CDS	699843	699986	-
GWHAAZE00000002	CDS	699622	699726	-
GWHAAZE00000002	CDS	699396	699509	-
GWHAAZE00000002	CDS	699207	699285	-
GWHAAZE00000002	CDS	698324	698367	-
GWHAAZE00000002	CDS	698176	698253	-

Transcript Sequence
>GWHTAAZE004985 ATGTACGCCAAATACCAAGAAGCTGTTGATGCTCTGCGACATGAACAGTTGGGGAGAAAGCAATCCCAAGATATCTTGGAGCGGGTCCTCTATGAAATTGAAGAGAAGGCTGGAGTCATCTTGGATGAGAGAGCGGAACATGAGAGATTGGTTGAGGCCTACTCTGCAGTTAACCAAAAATTGCAGCATTCTCTTTCTGAAAAGGGTACTTTAGAGAGAACCATCCAGGAGTTAAAGGTTGATTTGAGGAAACATGAACAAGACTTCTCTTTAAGTCAAAAGGACATTGCTGACCTTCAGAAACAGGTAACAGTGTTACTGAAGGAATGCCGTGATATACAACTTCGTTGTGGATCTGCAGGGCATGATTATGCCAGTGAAGATATGGCAGTTCCTGCTGGTCAATTTAGTGCTGAAACGGATGCTGAAAAAATTATTTCTGAGCGTCTGTTGACTTTTAGGGATATAAATGGATTAGTTGATCATAATGTCCAGCTTCGAAGCCTTGTCCGCAGCCTTACTGACCAGCTTGACAATAGAGATTTGGAGCTTAAGGTGAAGTTTGAAGAGGAACTTCGTAGACAATCTGATGAAGCTGCCTCTAAAGTTAATGCTGTATTAGCGAGAGCAGAAGAGCAAGGACGCATGCTTGAATCACTTCACACCTCTGTGGCTATGTACAAAAAGTTATATGAAGAAGAGCATAGACTTCGTTCTTCTTATCCTCAATCCCAAGACACTGCTCCAGAGGAAGGAAGGAAGGGTGTCATGCTTCTGCTTGAAGGAACACAGGACATTGCAAAAAAGGCTCAAGAACAAGCTTCTGCACATGTGAAATGCCTCGAGGAAGACCAGGCAAAGTTGAGGTAG

Network for GWHGAAZE004979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09291	TPR, MLP1, MLP2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.208
	SRR3591706	second leaf	13.970
	SRR3591707	mature leaf	21.494
	SRR3591708	Shoot apex	13.753
	SRR3591709	Stem	20.051
	SRR3591710	White floral bud	21.273
	SRR3591711	White flower	29.207
	SRR3591712	Green floral bud	14.253
	SRR3591713	Yellow flower	21.022
SRP173429	SRR8316895	Juvenile bud stage	11.297
	SRR8316896	Juvenile bud stage	13.566
	SRR8316897	Juvenile bud stage	6.283
	SRR8316894	Third green stage	7.434
	SRR8316900	Third green stage	13.646
	SRR8316901	Third green stage	11.365
	SRR8316898	Complete white stage	3.061
	SRR8316899	Complete white stage	10.295
	SRR8316903	Complete white stage	13.455
	SRR8316902	Silver flowering stage	6.871
	SRR8316904	Silver flowering stage	16.160
	SRR8316905	Silver flowering stage	7.107
	SRR8316906	Gold flowering stage	20.252
	SRR8316907	Gold flowering stage	13.527
	SRR8316908	Gold flowering stage	19.375
SRP132670	SRR6706286	Control	19.607
	SRR6706287	Light intensity 50%	23.358
	SRR6706288	Light intensity 20%	24.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.705
	CNS0095593	Slightly white alabastrum(diploid) 2	2.360
	CNS0095594	Slightly white alabastrum(diploid) 3	2.784
	CNS0095595	Whole white alabastrum(diploid) 2	4.094
	CNS0095596	Whole white alabastrum(diploid) 3	1.750
	CNS0095597	Whole white alabastrum(diploid) 4	3.373
	CNS0095598	Silvery flower (diploied) 1	7.934
	CNS0095599	Silvery flower (diploied) 2	6.188
	CNS0095600	Silvery flower (diploied) 3	21.299
	CNS0095601	Golden flower (diploid) 1	4.470
	CNS0095602	Golden flower (diploid) 2	23.677
	CNS0095603	Golden flower (diploid) 3	24.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.275
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.420
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.942
	CNS0095610	Silvery flower (tetraploid) 1	23.104
	CNS0095611	Silvery flower (tetraploid) 2	25.574
	CNS0095612	Silvery flower (tetraploid) 3	19.134
	CNS0095613	Golden flower (tetraploid) 1	5.218
	CNS0095614	Golden flower (tetraploid) 2	15.093
	CNS0095615	Golden flower (tetraploid) 3	29.212
CRA001975	CRR073297	Stem 1	24.171
	CRR073298	Stem 2	21.061
	CRR073299	Stem 3	17.009
	CRR073300	Leaf 1	22.319
	CRR073301	Leaf 2	17.832
	CRR073302	Leaf 3	12.028
	CRR073303	Juvenile bud 1	7.649
	CRR073304	Juvenile bud 2	7.385
	CRR073305	Juvenile bud 3	20.601
	CRR073306	Third green 1	9.760
	CRR073307	Third green 2	4.863
	CRR073308	Third green 3	10.581
	CRR073309	Second white 1	3.918
	CRR073310	Second white 2	12.277
	CRR073311	Second white 3	21.202
	CRR073312	Silver flowering 1	12.280
	CRR073313	Silver flowering 2	12.490
	CRR073314	Silver flowering 3	15.566
	CRR073315	Gold flowering 1	4.329
	CRR073316	Gold flowering 2	12.139
	CRR073317	Gold flowering 3	4.155
	CRR073318	Tawny withering 1	10.452
	CRR073319	Tawny withering 2	5.344
	CRR073320	Tawny withering 3	4.301