Gene detail

Detail information of GWHGAAZE004974

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011086322.1	PREDICTED: serine/threonine-protein kinase AGC1-7-like isoform X2 [Sesamum indicum]
Swissprot	tr\|Q1PFB9\|AGC17_ARATH	Serine/threonine-protein kinase AGC1-7 {ECO:0000305}
trEMBL	tr\|A0A068VFM0\|A0A068VFM0_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_446 {ECO:0000313\|EMBL:CDP19349.1}
TAIR10	AT1G79250.2	AGC kinase 1.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	572783	575077	-
GWHAAZE00000002	mRNA	572783	575077	-
GWHAAZE00000002	exon	574263	575077	-
GWHAAZE00000002	exon	572783	573671	-
GWHAAZE00000002	CDS	574263	575077	-
GWHAAZE00000002	CDS	572783	573671	-

Transcript Sequence
>GWHTAAZE004980 ATGGATATACTTGCCAAGGATAGTACTATCATAACTTCAAAGGAAACATATGACCCTCAGAAAATTGAAGAGACAACAAAGGGCATTGAGAATTCAACTCAAAATTCGTCATATAGACTTGAATGCATGGATCCAATTTGCAAAATTAGTGGTATAAATTCATCAAGTAAACAACCATATGAATCTAAAAAAATGGACCCAACTATGAAGAGTACTGGTGCTAACTCCTCTACTTATCCATGCCCATTGCCAAGTCCAATGATGACCAGCTCAGGACACCTTACAGCAACATCATCAAGCGTGGGAGTAGCTTTAAACACGAAGCCAGATGATGCTAAGAGTAGTTATTTGGTGATTAATGGTGGTAGAGGGAGTGGCAACAGCACTCGTAGTGACAACTTAGAGAGCTCTAGTGCACCCATCAAGCCCCACACTGGTGGTGATGTTCGTTGGGATGCCATTAACTTAATATCTGGCAAAGATTCTTCTCTTGGTCTCAGCCATTTTCGGCTATTGAAGCGCCTTGGTTATGGAGACATTGGAAGTGTCTATCTAGTTGAACTCAGAGGAACTAATGCCTACTTTGCCATGAAAGTCATGGATAAAGGATCTCTTGCGAGTAGAAATAAGTTACTTCGAGCTCAAACGGAAAGGGAGATTCTTGGTCTTCTTGACCATCCATTCTTGCCTACGTTATACTCTTACTTTGAGACTGATAAGTTCTACTGCTTGGTTATGGAGTTTTGCAGTGGGGGTAATCTCCATTCACTTCGACAGAAACAACCCAACAAGCATTTTACTGAGGAAGCCGCTAGGTTTTATGCATCAGAGGTGTTATTGGCACTTGAGTATCTGCATATGCTAGGGATTGTTTATAGAGATCTAAAGCCAGAAAATGTGCTCGTAAGAGAGGAGGGTCATATTATGCTCTCAGACTTTGACCTATCACTTCGGTGCTCCGTCAGTCCAACCCTTGTCAAGTCATCTTCTGTACATGCAGCGGCCAACGGGGGTGTTGGTGCTGGTGCTGGTGCTGGCGGCATATTAGATGATGATCATGTGGTGCATGGTTGTATCCAGCCATCAAATTTTCTGCCACGCATTCTACCTACAAAGAAGAATCGGAAATCTAAATCAGATTTTGGCCTGTTTGTCAAAGGGACCCTCCCGGAGCTAATGGCAGAGCCAACTAATGTGCGGTCAATGTCGTTTGTGGGGACCCATGAGTATCTAGCCCCAGAGATAATAAAGGGAGAAGGTCACGGTAGTGCAGTGGACTGGTGGACTTTTGGCATCTTCTTGTACGAGCTTTTGCACGGAACAACCCCTTTCAAAGGCACAGGAAATCGTGCCACACTTTGTAATGTTGTAGGGCAGCCACTAAGATTCCCAGAAACGCCCCAAGTGAGTCTTACAGCACGTGATCTTATACGAGGGCTATTGATCAAGGAACCACAAAAACGAATTGCGTATAAAAGGGGTGCTACAGAAATAAAACAACACGCATTCTTCGAGGGTGTGAATTGGGCTCTAGTAAGAAGCGCTGTCCCTCCCCATATACCTGAACCTGTAGACTTTGGGCAATTTGCTAGTAAAGAGGCTGCAACACATTCGGACAAGAAAATTGTAGAAATTGGAAGAGTTGATATGAATAAGAGTAGTTCTAGTGATTCTTCTTCTTATGTTGATTTCGAATACTTTTAG

Network for GWHGAAZE004974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	170	323	1.50E-37
PF00069.26	Pkinase	352	504	1.40E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.201
	SRR3591706	second leaf	0.287
	SRR3591707	mature leaf	0.122
	SRR3591708	Shoot apex	0.004
	SRR3591709	Stem	2.597
	SRR3591710	White floral bud	23.962
	SRR3591711	White flower	1.485
	SRR3591712	Green floral bud	9.799
	SRR3591713	Yellow flower	0.253
SRP173429	SRR8316895	Juvenile bud stage	0.089
	SRR8316896	Juvenile bud stage	0.046
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.139
	SRR8316900	Third green stage	1.660
	SRR8316901	Third green stage	1.007
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	0.061
	SRR8316903	Complete white stage	0.080
	SRR8316902	Silver flowering stage	0.093
	SRR8316904	Silver flowering stage	0.347
	SRR8316905	Silver flowering stage	0.141
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.240
SRP132670	SRR6706286	Control	1.754
	SRR6706287	Light intensity 50%	2.152
	SRR6706288	Light intensity 20%	1.885
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.722
	CNS0095593	Slightly white alabastrum(diploid) 2	0.644
	CNS0095594	Slightly white alabastrum(diploid) 3	0.373
	CNS0095595	Whole white alabastrum(diploid) 2	3.499
	CNS0095596	Whole white alabastrum(diploid) 3	3.614
	CNS0095597	Whole white alabastrum(diploid) 4	5.724
	CNS0095598	Silvery flower (diploied) 1	0.856
	CNS0095599	Silvery flower (diploied) 2	2.920
	CNS0095600	Silvery flower (diploied) 3	0.990
	CNS0095601	Golden flower (diploid) 1	1.136
	CNS0095602	Golden flower (diploid) 2	0.965
	CNS0095603	Golden flower (diploid) 3	1.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.321
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.753
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.640
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.073
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.602
	CNS0095610	Silvery flower (tetraploid) 1	0.753
	CNS0095611	Silvery flower (tetraploid) 2	1.841
	CNS0095612	Silvery flower (tetraploid) 3	5.489
	CNS0095613	Golden flower (tetraploid) 1	0.491
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	2.519
CRA001975	CRR073297	Stem 1	0.325
	CRR073298	Stem 2	0.036
	CRR073299	Stem 3	0.142
	CRR073300	Leaf 1	2.045
	CRR073301	Leaf 2	0.792
	CRR073302	Leaf 3	0.434
	CRR073303	Juvenile bud 1	6.201
	CRR073304	Juvenile bud 2	8.008
	CRR073305	Juvenile bud 3	0.473
	CRR073306	Third green 1	2.398
	CRR073307	Third green 2	3.093
	CRR073308	Third green 3	2.208
	CRR073309	Second white 1	0.301
	CRR073310	Second white 2	0.641
	CRR073311	Second white 3	0.438
	CRR073312	Silver flowering 1	3.211
	CRR073313	Silver flowering 2	3.284
	CRR073314	Silver flowering 3	2.069
	CRR073315	Gold flowering 1	3.647
	CRR073316	Gold flowering 2	0.710
	CRR073317	Gold flowering 3	1.257
	CRR073318	Tawny withering 1	2.539
	CRR073319	Tawny withering 2	3.647
	CRR073320	Tawny withering 3	1.704