Detail information of GWHGAAZE004971


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010907077.11.4029E-109PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Elaeis guineensis]
Swissprottr|Q42540|UBC7_ARATH8E-101Ubiquitin-conjugating enzyme E2 7
trEMBLtr|M0TCL5|M0TCL5_MUSAM2E-109Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P34220_001}
TAIR10AT5G59300.11E-72ubiquitin carrier protein 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene451925461541-
GWHAAZE00000002mRNA451925461541-
GWHAAZE00000002exon451925451987-
GWHAAZE00000002exon452544452697-
GWHAAZE00000002exon452953453030-
GWHAAZE00000002exon453203453303-
GWHAAZE00000002exon453386453483-
GWHAAZE00000002exon461257461359-
GWHAAZE00000002exon461493461541-
GWHAAZE00000002CDS461493461541-
GWHAAZE00000002CDS461257461359-
GWHAAZE00000002CDS453386453483-
GWHAAZE00000002CDS453203453303-
GWHAAZE00000002CDS452953453030-
GWHAAZE00000002CDS452620452697-
GWHAAZE00000002three_prime_UTR452544452619-
GWHAAZE00000002three_prime_UTR451925451987-
Transcript Sequence

Network for GWHGAAZE004971

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con111601.10E-51
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10575UBE2G1, UBC7 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf74.410
SRR3591706second leaf53.943
SRR3591707mature leaf245.343
SRR3591708Shoot apex95.134
SRR3591709Stem131.884
SRR3591710White floral bud93.078
SRR3591711White flower57.669
SRR3591712Green floral bud152.910
SRR3591713Yellow flower41.755
SRP173429 SRR8316895Juvenile bud stage 40.993
SRR8316896Juvenile bud stage 58.526
SRR8316897Juvenile bud stage 27.287
SRR8316894Third green stage 25.979
SRR8316900Third green stage 71.118
SRR8316901Third green stage 79.367
SRR8316898Complete white stage 43.812
SRR8316899Complete white stage 190.842
SRR8316903Complete white stage 56.786
SRR8316902Silver flowering stage13.511
SRR8316904Silver flowering stage15.902
SRR8316905Silver flowering stage6.084
SRR8316906Gold flowering stage 16.178
SRR8316907Gold flowering stage 12.730
SRR8316908Gold flowering stage 18.046
SRP132670SRR6706286Control79.138
SRR6706287Light intensity 50%74.672
SRR6706288Light intensity 20%88.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.516
CNS0095593Slightly white alabastrum(diploid) 292.104
CNS0095594Slightly white alabastrum(diploid) 380.073
CNS0095595Whole white alabastrum(diploid) 284.459
CNS0095596Whole white alabastrum(diploid) 3100.468
CNS0095597Whole white alabastrum(diploid) 492.583
CNS0095598Silvery flower (diploied) 176.298
CNS0095599Silvery flower (diploied) 252.513
CNS0095600Silvery flower (diploied) 358.961
CNS0095601Golden flower (diploid) 192.598
CNS0095602Golden flower (diploid) 285.153
CNS0095603Golden flower (diploid) 377.701
CNS0095604Slightly white alabastrum(tetraploid) 194.077
CNS0095605Slightly white alabastrum(tetraploid) 284.044
CNS0095606Slightly white alabastrum(tetraploid) 3119.723
CNS0095607Whole white alabastrum(tetraploid) 175.128
CNS0095608Whole white alabastrum(tetraploid) 276.698
CNS0095609Whole white alabastrum(tetraploid) 3104.867
CNS0095610Silvery flower (tetraploid) 143.749
CNS0095611Silvery flower (tetraploid) 277.280
CNS0095612Silvery flower (tetraploid) 349.736
CNS0095613Golden flower (tetraploid) 126.391
CNS0095614Golden flower (tetraploid) 233.116
CNS0095615Golden flower (tetraploid) 330.457
CRA001975CRR073297Stem 144.239
CRR073298Stem 241.624
CRR073299Stem 342.758
CRR073300Leaf 157.314
CRR073301Leaf 248.124
CRR073302Leaf 358.796
CRR073303Juvenile bud 183.234
CRR073304Juvenile bud 281.461
CRR073305Juvenile bud 392.940
CRR073306Third green 118.263
CRR073307Third green 228.167
CRR073308Third green 317.352
CRR073309Second white 113.466
CRR073310Second white 29.488
CRR073311Second white 34.253
CRR073312Silver flowering 12.044
CRR073313Silver flowering 25.858
CRR073314Silver flowering 36.602
CRR073315Gold flowering 172.729
CRR073316Gold flowering 275.365
CRR073317Gold flowering 3110.316
CRR073318Tawny withering 166.949
CRR073319Tawny withering 270.513
CRR073320Tawny withering 373.590